{"id":"https://openalex.org/W4200324122","doi":"https://doi.org/10.3233/shti210717","title":"Comparison of Word and Character Level Information for Medical Term Identification Using Convolutional Neural Networks and Transformers","display_name":"Comparison of Word and Character Level Information for Medical Term Identification Using Convolutional Neural Networks and Transformers","publication_year":2021,"publication_date":"2021-12-15","ids":{"openalex":"https://openalex.org/W4200324122","doi":"https://doi.org/10.3233/shti210717","pmid":"https://pubmed.ncbi.nlm.nih.gov/34920520"},"language":"en","primary_location":{"id":"doi:10.3233/shti210717","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210717","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210717","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210717","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056583300","display_name":"Sandaru Seneviratne","orcid":"https://orcid.org/0000-0001-8320-5084"},"institutions":[{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Sandaru Seneviratne","raw_affiliation_strings":["School of Computing, The Australian National University (ANU), Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, The Australian National University (ANU), Australia","institution_ids":["https://openalex.org/I118347636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113647192","display_name":"Artem Lenskiy","orcid":null},"institutions":[{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Artem Lenskiy","raw_affiliation_strings":["School of Computing, The Australian National University (ANU), Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, The Australian National University (ANU), Australia","institution_ids":["https://openalex.org/I118347636"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051590202","display_name":"Christopher J. Nolan","orcid":"https://orcid.org/0000-0002-6964-3819"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christopher Nolan","raw_affiliation_strings":["ANU Medical School and John Curtin School of Medical Research, ANU, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ANU Medical School and John Curtin School of Medical Research, ANU, Australia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035271389","display_name":"Eleni Daskalaki","orcid":"https://orcid.org/0000-0001-5416-3372"},"institutions":[{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Eleni Daskalaki","raw_affiliation_strings":["School of Computing, The Australian National University (ANU), Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, The Australian National University (ANU), Australia","institution_ids":["https://openalex.org/I118347636"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059778915","display_name":"Hanna Suominen","orcid":"https://orcid.org/0000-0002-4195-1641"},"institutions":[{"id":"https://openalex.org/I118347636","display_name":"Australian National University","ror":"https://ror.org/019wvm592","country_code":"AU","type":"education","lineage":["https://openalex.org/I118347636"]},{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU","FI"],"is_corresponding":false,"raw_author_name":"Hanna Suominen","raw_affiliation_strings":["Data61, Commonwealth Scientific and Industrial Research Organisation, Australia","Department of Computing, University of Turku, Finland","School of Computing, The Australian National University (ANU), Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I42894916"]},{"raw_affiliation_string":"Department of Computing, University of Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"School of Computing, The Australian National University (ANU), Australia","institution_ids":["https://openalex.org/I118347636"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5056583300"],"corresponding_institution_ids":["https://openalex.org/I118347636"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.24704326,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"284","issue":null,"first_page":"249","last_page":"253"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12881","display_name":"linguistics and terminology studies","score":0.9435999989509583,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10759","display_name":"Translation Studies and Practices","score":0.9431999921798706,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7578752040863037},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6665438413619995},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6641340851783752},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.655063271522522},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.563778817653656},{"id":"https://openalex.org/keywords/character","display_name":"Character (mathematics)","score":0.5151752233505249},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.5150251388549805},{"id":"https://openalex.org/keywords/semeval","display_name":"SemEval","score":0.5025467872619629},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.48231029510498047},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4498814046382904},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4451406002044678},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.1121194064617157},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09381306171417236}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7578752040863037},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6665438413619995},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6641340851783752},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.655063271522522},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.563778817653656},{"id":"https://openalex.org/C2780861071","wikidata":"https://www.wikidata.org/wiki/Q1062934","display_name":"Character (mathematics)","level":2,"score":0.5151752233505249},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.5150251388549805},{"id":"https://openalex.org/C44572571","wikidata":"https://www.wikidata.org/wiki/Q7448970","display_name":"SemEval","level":3,"score":0.5025467872619629},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.48231029510498047},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4498814046382904},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4451406002044678},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.1121194064617157},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09381306171417236},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti210717","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210717","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210717","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:34920520","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34920520","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:www.utupub.fi:10024/189254","is_oa":true,"landing_page_url":"https://ebooks.iospress.nl/doi/10.3233/SHTI210717","pdf_url":null,"source":{"id":"https://openalex.org/S4306402470","display_name":"UTUPub (University of Turku)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I155660961","host_organization_name":"University of Turku","host_organization_lineage":["https://openalex.org/I155660961"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti210717","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210717","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210717","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.7599999904632568,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4200324122.pdf","grobid_xml":"https://content.openalex.org/works/W4200324122.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W156014160","https://openalex.org/W1964157370","https://openalex.org/W2250539671","https://openalex.org/W2787031888","https://openalex.org/W2798575764","https://openalex.org/W2805222462","https://openalex.org/W2841129672","https://openalex.org/W2872085784","https://openalex.org/W2951520515","https://openalex.org/W2963923670","https://openalex.org/W2970971581","https://openalex.org/W4288079856","https://openalex.org/W4295312788","https://openalex.org/W4385245566","https://openalex.org/W6606380520","https://openalex.org/W6691431627","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W1988325893","https://openalex.org/W3029012650","https://openalex.org/W2776212826","https://openalex.org/W3214323197","https://openalex.org/W2805679416","https://openalex.org/W2805889480","https://openalex.org/W4385571001","https://openalex.org/W2188275805","https://openalex.org/W4385570496","https://openalex.org/W4287641341"],"abstract_inverted_index":{"Complexity":[0],"and":[1,11,25,47,57,72,91],"domain-specificity":[2],"make":[3],"medical":[4,34,46,108,118],"text":[5],"hard":[6],"to":[7,32],"understand":[8],"for":[9,107,117],"patients":[10],"their":[12],"next":[13],"of":[14,45,80],"kin.":[15],"To":[16],"simplify":[17],"such":[18],"text,":[19],"this":[20],"paper":[21],"explored":[22],"how":[23],"word":[24,90,101,105],"character":[26,92],"level":[27,93],"information":[28],"can":[29],"be":[30],"leveraged":[31],"identify":[33],"terms":[35,49],"when":[36],"training":[37],"data":[38],"is":[39,115],"limited.":[40],"We":[41],"created":[42],"a":[43,85],"dataset":[44],"general":[48,100],"using":[50,122],"the":[51],"Human":[52],"Disease":[53],"Ontology":[54],"from":[55,62],"BioPortal":[56],"Wikipedia":[58],"pages.":[59],"Our":[60],"results":[61],"10-fold":[63],"cross":[64],"validation":[65],"indicated":[66],"that":[67,99],"convolutional":[68],"neural":[69],"networks":[70],"(CNNs)":[71],"transformers":[73],"perform":[74],"competitively.":[75],"The":[76],"best":[77],"F":[78],"score":[79],"93.9%":[81],"was":[82],"achieved":[83],"by":[84],"CNN":[86],"trained":[87],"on":[88,113],"both":[89],"embeddings.":[94],"Statistical":[95],"significance":[96],"tests":[97],"demonstrated":[98],"embeddings":[102],"provide":[103],"rich":[104],"representations":[106],"term":[109,119],"identification.":[110],"Consequently,":[111],"focusing":[112],"words":[114],"favorable":[116],"identification":[120],"if":[121],"deep":[123],"learning":[124],"architectures.":[125]},"counts_by_year":[],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2021-12-31T00:00:00"}
