{"id":"https://openalex.org/W3200582386","doi":"https://doi.org/10.3233/shti210545","title":"Towards the Representation of Genomic Data in HL7 FHIR and OMOP CDM","display_name":"Towards the Representation of Genomic Data in HL7 FHIR and OMOP CDM","publication_year":2021,"publication_date":"2021-09-21","ids":{"openalex":"https://openalex.org/W3200582386","doi":"https://doi.org/10.3233/shti210545","mag":"3200582386","pmid":"https://pubmed.ncbi.nlm.nih.gov/34545823"},"language":"en","primary_location":{"id":"doi:10.3233/shti210545","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210545","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210545","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210545","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065519363","display_name":"Yuan Peng","orcid":"https://orcid.org/0000-0002-6163-9532"},"institutions":[{"id":"https://openalex.org/I4210162051","display_name":"University Hospital Carl Gustav Carus","ror":"https://ror.org/04za5zm41","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210162051"]},{"id":"https://openalex.org/I78650965","display_name":"TU Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Yuan Peng","raw_affiliation_strings":["Institute for Medical Informatics and Biometry at Carl Gustav Carus Faculty of Medicine at Technische Universit\u00e4t Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics and Biometry at Carl Gustav Carus Faculty of Medicine at Technische Universit\u00e4t Dresden, Germany","institution_ids":["https://openalex.org/I4210162051","https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022809565","display_name":"Azadeh Nassirian","orcid":"https://orcid.org/0000-0003-3987-1922"},"institutions":[{"id":"https://openalex.org/I4210162051","display_name":"University Hospital Carl Gustav Carus","ror":"https://ror.org/04za5zm41","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210162051"]},{"id":"https://openalex.org/I78650965","display_name":"TU Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Azadeh Nassirian","raw_affiliation_strings":["Institute for Medical Informatics and Biometry at Carl Gustav Carus Faculty of Medicine at Technische Universit\u00e4t Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics and Biometry at Carl Gustav Carus Faculty of Medicine at Technische Universit\u00e4t Dresden, Germany","institution_ids":["https://openalex.org/I4210162051","https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021693315","display_name":"Najia Ahmadi","orcid":"https://orcid.org/0000-0001-9769-5109"},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"TU Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]},{"id":"https://openalex.org/I4210162051","display_name":"University Hospital Carl Gustav Carus","ror":"https://ror.org/04za5zm41","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210162051"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Najia Ahmadi","raw_affiliation_strings":["Institute for Medical Informatics and Biometry at Carl Gustav Carus Faculty of Medicine at Technische Universit\u00e4t Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics and Biometry at Carl Gustav Carus Faculty of Medicine at Technische Universit\u00e4t Dresden, Germany","institution_ids":["https://openalex.org/I4210162051","https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072891251","display_name":"Martin Sedlmayr","orcid":"https://orcid.org/0000-0002-9888-8460"},"institutions":[{"id":"https://openalex.org/I4210162051","display_name":"University Hospital Carl Gustav Carus","ror":"https://ror.org/04za5zm41","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210162051"]},{"id":"https://openalex.org/I78650965","display_name":"TU Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Sedlmayr","raw_affiliation_strings":["Institute for Medical Informatics and Biometry at Carl Gustav Carus Faculty of Medicine at Technische Universit\u00e4t Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics and Biometry at Carl Gustav Carus Faculty of Medicine at Technische Universit\u00e4t Dresden, Germany","institution_ids":["https://openalex.org/I4210162051","https://openalex.org/I78650965"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077252997","display_name":"Franziska Bathelt","orcid":"https://orcid.org/0000-0002-4139-5489"},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"TU Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]},{"id":"https://openalex.org/I4210162051","display_name":"University Hospital Carl Gustav Carus","ror":"https://ror.org/04za5zm41","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210162051"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Franziska Bathelt","raw_affiliation_strings":["Institute for Medical Informatics and Biometry at Carl Gustav Carus Faculty of Medicine at Technische Universit\u00e4t Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics and Biometry at Carl Gustav Carus Faculty of Medicine at Technische Universit\u00e4t Dresden, Germany","institution_ids":["https://openalex.org/I4210162051","https://openalex.org/I78650965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5065519363"],"corresponding_institution_ids":["https://openalex.org/I4210162051","https://openalex.org/I78650965"],"apc_list":null,"apc_paid":null,"fwci":11.3603,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.98653199,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"283","issue":null,"first_page":"86","last_page":"94"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9415000081062317,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9415000081062317,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9172000288963318,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7061824798583984},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7016294002532959},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.6210685968399048},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4608592092990875},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.45004332065582275},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4367668032646179},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4230085015296936},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39093148708343506},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3262330889701843},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.12538191676139832},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10139229893684387}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7061824798583984},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7016294002532959},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.6210685968399048},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4608592092990875},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.45004332065582275},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4367668032646179},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4230085015296936},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39093148708343506},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3262330889701843},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.12538191676139832},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10139229893684387},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti210545","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210545","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210545","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:34545823","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34545823","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti210545","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210545","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210545","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.5799999833106995}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3200582386.pdf","grobid_xml":"https://content.openalex.org/works/W3200582386.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W2410450155","https://openalex.org/W2541090023","https://openalex.org/W2773318670","https://openalex.org/W2801182702","https://openalex.org/W2902328511","https://openalex.org/W2915954436","https://openalex.org/W2949803482","https://openalex.org/W2969628488","https://openalex.org/W2981115805","https://openalex.org/W3033701936","https://openalex.org/W3094568303","https://openalex.org/W3118564271","https://openalex.org/W3134300625"],"related_works":["https://openalex.org/W4229067810","https://openalex.org/W4309652279","https://openalex.org/W4285502407","https://openalex.org/W4320004746","https://openalex.org/W59456844","https://openalex.org/W2119748718","https://openalex.org/W4282001164","https://openalex.org/W2898672651","https://openalex.org/W2120534674","https://openalex.org/W2163412015"],"abstract_inverted_index":{"High":[0],"throughput":[1],"sequencing":[2],"technologies":[3],"have":[4,58],"facilitated":[5],"an":[6],"outburst":[7],"in":[8,19,107,159,176],"biological":[9],"knowledge":[10],"over":[11,139],"the":[12,30,85,95,103,117,155,190],"past":[13],"decades":[14],"and":[15,34,40,73,83,102,110],"thus":[16],"enables":[17],"improvements":[18],"personalized":[20],"medicine.":[21],"In":[22],"order":[23],"to":[24,66,124,150,188,192],"support":[25,50],"(international)":[26],"medical":[27],"research":[28],"with":[29,134,169,182],"combination":[31],"of":[32,42,54,88,137,178],"genomic":[33,55,64,119,184,202],"clinical":[35],"patient":[36,183],"data,":[37,56],"a":[38,135],"standardization":[39],"harmonization":[41],"these":[43],"data":[44,65,86,100,105,120,158,185],"sources":[45],"is":[46],"highly":[47],"desirable.":[48],"To":[49],"this":[51],"increasing":[52],"importance":[53],"we":[57,93],"created":[59],"semantic":[60],"mapping":[61,96],"from":[62,128],"raw":[63],"both":[67,89,108],"FHIR":[68,109,143,160],"(Fast":[69],"Healthcare":[70],"Interoperability":[71],"Resources)":[72],"OMOP":[74,111,125,166,180],"(Observational":[75],"Medical":[76],"Outcomes":[77],"Partnership)":[78],"CDM":[79,126,167,181],"(Common":[80],"Data":[81],"Model)":[82],"analyzed":[84],"coverage":[87,106,136],"models.":[90],"For":[91],"this,":[92],"calculated":[94],"score":[97],"for":[98],"different":[99,194],"categories":[101],"relative":[104],"CDM.":[112],"Our":[113,173],"results":[114],"show,":[115],"that":[116],"patients":[118],"can":[121,161],"be":[122,162],"mapped":[123],"directly":[127],"VCF":[129],"(Variant":[130],"Call":[131],"Format)":[132],"file":[133],"slightly":[138],"50%.":[140],"However,":[141],"using":[142,186],"as":[144,154],"intermediate":[145],"representation":[146],"does":[147],"not":[148],"lead":[149],"further":[151,163],"information":[152],"loss":[153],"already":[156],"stored":[157],"transformed":[164],"into":[165],"format":[168],"almost":[170],"100%":[171],"success.":[172],"findings":[174],"are":[175],"favor":[177],"extending":[179],"ETL":[187],"enable":[189],"researchers":[191],"apply":[193],"analysis":[195],"methods":[196],"including":[197],"machine":[198],"learning":[199],"algorithms":[200],"on":[201],"data.":[203]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
