{"id":"https://openalex.org/W3165618614","doi":"https://doi.org/10.3233/shti210373","title":"Bioinformatic Analysis of MIRU-VNTR Repeats of Mycobacterium Tuberculosis Strains from Lagos, Nigeria","display_name":"Bioinformatic Analysis of MIRU-VNTR Repeats of Mycobacterium Tuberculosis Strains from Lagos, Nigeria","publication_year":2021,"publication_date":"2021-05-27","ids":{"openalex":"https://openalex.org/W3165618614","doi":"https://doi.org/10.3233/shti210373","mag":"3165618614","pmid":"https://pubmed.ncbi.nlm.nih.gov/34042866"},"language":"en","primary_location":{"id":"doi:10.3233/shti210373","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210373","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210373","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210373","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023818154","display_name":"Seydou Golo Barro","orcid":"https://orcid.org/0000-0001-8274-6700"},"institutions":[{"id":"https://openalex.org/I3131918342","display_name":"Nazi Boni University","ror":"https://ror.org/04cq90n15","country_code":"BF","type":"education","lineage":["https://openalex.org/I3131918342"]}],"countries":["BF"],"is_corresponding":false,"raw_author_name":"Seydou Golo Barro","raw_affiliation_strings":["Nazi Boni University, Bobo-Dioulasso, Burkina Faso","RETINES Lab \u2013 IRIS department \u2013 Medical Faculty of Nice University, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nazi Boni University, Bobo-Dioulasso, Burkina Faso","institution_ids":["https://openalex.org/I3131918342"]},{"raw_affiliation_string":"RETINES Lab \u2013 IRIS department \u2013 Medical Faculty of Nice University, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063307716","display_name":"Faouziatou Bance","orcid":null},"institutions":[{"id":"https://openalex.org/I3131918342","display_name":"Nazi Boni University","ror":"https://ror.org/04cq90n15","country_code":"BF","type":"education","lineage":["https://openalex.org/I3131918342"]}],"countries":["BF"],"is_corresponding":false,"raw_author_name":"Faouziatou Bance","raw_affiliation_strings":["Nazi Boni University, Bobo-Dioulasso, Burkina Faso"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nazi Boni University, Bobo-Dioulasso, Burkina Faso","institution_ids":["https://openalex.org/I3131918342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062591099","display_name":"Amadou Dicko","orcid":"https://orcid.org/0000-0003-2282-3086"},"institutions":[{"id":"https://openalex.org/I3131918342","display_name":"Nazi Boni University","ror":"https://ror.org/04cq90n15","country_code":"BF","type":"education","lineage":["https://openalex.org/I3131918342"]}],"countries":["BF"],"is_corresponding":false,"raw_author_name":"Amadou Dicko","raw_affiliation_strings":["National Institute of Public Health, Burkina Faso","Nazi Boni University, Bobo-Dioulasso, Burkina Faso"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Public Health, Burkina Faso","institution_ids":[]},{"raw_affiliation_string":"Nazi Boni University, Bobo-Dioulasso, Burkina Faso","institution_ids":["https://openalex.org/I3131918342"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027859853","display_name":"Michel Gomgnibou","orcid":null},"institutions":[{"id":"https://openalex.org/I3131918342","display_name":"Nazi Boni University","ror":"https://ror.org/04cq90n15","country_code":"BF","type":"education","lineage":["https://openalex.org/I3131918342"]}],"countries":["BF"],"is_corresponding":false,"raw_author_name":"Michel Gomgnibou","raw_affiliation_strings":["Nazi Boni University, Bobo-Dioulasso, Burkina Faso"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nazi Boni University, Bobo-Dioulasso, Burkina Faso","institution_ids":["https://openalex.org/I3131918342"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056891151","display_name":"Pascal Staccini","orcid":"https://orcid.org/0000-0002-7608-4066"},"institutions":[{"id":"https://openalex.org/I4210119200","display_name":"Institut de Recherche sur le Cancer et le Vieillissement de Nice","ror":"https://ror.org/01td3kv81","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I201841394","https://openalex.org/I4210096427","https://openalex.org/I4210119200"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pascal Staccini","raw_affiliation_strings":["RETINES Lab \u2013 IRIS department \u2013 Medical Faculty of Nice University, France","RETINES Lab - IRIS department - Medical Faculty of Nice University, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RETINES Lab \u2013 IRIS department \u2013 Medical Faculty of Nice University, France","institution_ids":[]},{"raw_affiliation_string":"RETINES Lab - IRIS department - Medical Faculty of Nice University, France","institution_ids":["https://openalex.org/I4210119200"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09585122,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"281","issue":null,"first_page":"1120","last_page":"1121"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9394000172615051,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9394000172615051,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9169999957084656,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.6234827637672424},{"id":"https://openalex.org/keywords/macro","display_name":"Macro","score":0.6181127429008484},{"id":"https://openalex.org/keywords/variable-number-tandem-repeat","display_name":"Variable number tandem repeat","score":0.5777159333229065},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5683741569519043},{"id":"https://openalex.org/keywords/mycobacterium-tuberculosis","display_name":"Mycobacterium tuberculosis","score":0.554516613483429},{"id":"https://openalex.org/keywords/outlier","display_name":"Outlier","score":0.5466206669807434},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5148095488548279},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.5012359619140625},{"id":"https://openalex.org/keywords/microsoft-excel","display_name":"Microsoft excel","score":0.42334091663360596},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38763463497161865},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36460787057876587},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2561127245426178},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.23505043983459473},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.23268115520477295},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19692754745483398},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19264894723892212},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17564398050308228},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1733781397342682},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.13941442966461182},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.11397895216941833},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07703211903572083}],"concepts":[{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.6234827637672424},{"id":"https://openalex.org/C166955791","wikidata":"https://www.wikidata.org/wiki/Q629579","display_name":"Macro","level":2,"score":0.6181127429008484},{"id":"https://openalex.org/C189036908","wikidata":"https://www.wikidata.org/wiki/Q2587423","display_name":"Variable number tandem repeat","level":4,"score":0.5777159333229065},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5683741569519043},{"id":"https://openalex.org/C2777975735","wikidata":"https://www.wikidata.org/wiki/Q130971","display_name":"Mycobacterium tuberculosis","level":3,"score":0.554516613483429},{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.5466206669807434},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5148095488548279},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.5012359619140625},{"id":"https://openalex.org/C3019730874","wikidata":"https://www.wikidata.org/wiki/Q11272","display_name":"Microsoft excel","level":2,"score":0.42334091663360596},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38763463497161865},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36460787057876587},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2561127245426178},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.23505043983459473},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.23268115520477295},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19692754745483398},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19264894723892212},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17564398050308228},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1733781397342682},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.13941442966461182},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.11397895216941833},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07703211903572083},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009169","descriptor_name":"Mycobacterium tuberculosis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009549","descriptor_name":"Nigeria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009549","descriptor_name":"Nigeria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009549","descriptor_name":"Nigeria","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015373","descriptor_name":"Bacterial Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015373","descriptor_name":"Bacterial Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015373","descriptor_name":"Bacterial Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018598","descriptor_name":"Minisatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018598","descriptor_name":"Minisatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018598","descriptor_name":"Minisatellite Repeats","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti210373","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210373","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210373","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:34042866","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34042866","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti210373","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210373","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210373","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10","score":0.7400000095367432}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3165618614.pdf","grobid_xml":"https://content.openalex.org/works/W3165618614.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2435463261","https://openalex.org/W2384012027","https://openalex.org/W2102118092","https://openalex.org/W2062243448","https://openalex.org/W2118793193","https://openalex.org/W3164870168","https://openalex.org/W2023235106","https://openalex.org/W2613171481","https://openalex.org/W2280721811","https://openalex.org/W4285288441"],"abstract_inverted_index":{"The":[0,26,82,95],"analysis":[1],"of":[2,8,16,23,40,69,76,84,86,100,106,114],"Mycobacterial":[3],"Interpersed":[4],"Repetitive":[5],"Unit-Variable":[6],"Number":[7],"Tandem":[9],"Repeat":[10],"(MIRU-VNTR)":[11],"discriminates":[12],"against":[13],"the":[14,21,24,30,47,66,70,74,101,110,115],"species":[15],"M.":[17],"tuberculosis":[18],"involved":[19,35],"in":[20,78],"transmission":[22],"disease.":[25],"reference":[27],"method":[28,39],"is":[29],"manual":[31,48],"method.":[32,49],"Our":[33],"study":[34],"developing":[36],"a":[37,79],"bioinformatics":[38],"interpreting":[41],"MIRU-VNTR":[42],"and":[43,58,72,112],"comparing":[44],"it":[45],"to":[46,64],"For":[50],"this":[51],"we":[52],"used":[53,63,89],"two":[54],"softwares,":[55],"namely":[56],"imagej":[57],"Microsoft":[59],"Excel.":[60],"Imagej":[61],"was":[62,90],"determine":[65],"migration":[67],"distance":[68],"bands":[71],"for":[73],"measure":[75],"size":[77],"base":[80],"pair.":[81],"number":[83],"repetitions":[85],"18":[87],"markers":[88],"analyzed":[91],"with":[92],"Excel":[93],"macro.":[94],"results":[96,102,116],"obtained":[97],"were:":[98],"27%":[99],"exactly":[103],"consistent,":[104],"16%":[105],"outliers":[107],"generated":[108],"by":[109],"macro":[111],"57%":[113],"not":[117],"matching.":[118]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
