{"id":"https://openalex.org/W3164144477","doi":"https://doi.org/10.3233/shti210169","title":"FhirSpark \u2013 Implementing a Mediation Layer to Bring FHIR to the cBioPortal for Cancer Genomics","display_name":"FhirSpark \u2013 Implementing a Mediation Layer to Bring FHIR to the cBioPortal for Cancer Genomics","publication_year":2021,"publication_date":"2021-05-27","ids":{"openalex":"https://openalex.org/W3164144477","doi":"https://doi.org/10.3233/shti210169","mag":"3164144477","pmid":"https://pubmed.ncbi.nlm.nih.gov/34042754"},"language":"en","primary_location":{"id":"doi:10.3233/shti210169","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210169","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210169","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210169","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077283446","display_name":"Niklas Reimer","orcid":"https://orcid.org/0000-0002-0491-3929"},"institutions":[{"id":"https://openalex.org/I9341345","display_name":"University of L\u00fcbeck","ror":"https://ror.org/00t3r8h32","country_code":"DE","type":"education","lineage":["https://openalex.org/I9341345"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Niklas Reimer","raw_affiliation_strings":["Group for Medical Systems Biology, L\u00fcbeck Institute of Experimental Dermatology, University of L\u00fcbeck, Germany"],"affiliations":[{"raw_affiliation_string":"Group for Medical Systems Biology, L\u00fcbeck Institute of Experimental Dermatology, University of L\u00fcbeck, Germany","institution_ids":["https://openalex.org/I9341345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025720706","display_name":"Philipp Unberath","orcid":"https://orcid.org/0000-0002-1269-9360"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Philipp Unberath","raw_affiliation_strings":["Department of Medical Informatics, Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg, Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086749090","display_name":"Hauke Busch","orcid":"https://orcid.org/0000-0003-4763-4521"},"institutions":[{"id":"https://openalex.org/I9341345","display_name":"University of L\u00fcbeck","ror":"https://ror.org/00t3r8h32","country_code":"DE","type":"education","lineage":["https://openalex.org/I9341345"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hauke Busch","raw_affiliation_strings":["Group for Medical Systems Biology, L\u00fcbeck Institute of Experimental Dermatology, University of L\u00fcbeck, Germany"],"affiliations":[{"raw_affiliation_string":"Group for Medical Systems Biology, L\u00fcbeck Institute of Experimental Dermatology, University of L\u00fcbeck, Germany","institution_ids":["https://openalex.org/I9341345"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074605677","display_name":"Josef Ingenerf","orcid":"https://orcid.org/0000-0002-3274-8422"},"institutions":[{"id":"https://openalex.org/I9341345","display_name":"University of L\u00fcbeck","ror":"https://ror.org/00t3r8h32","country_code":"DE","type":"education","lineage":["https://openalex.org/I9341345"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Josef Ingenerf","raw_affiliation_strings":["IT Center for Clinical Research, University of L\u00fcbeck, Germany","Institute of Medical Informatics, University of L\u00fcbeck, Germany"],"affiliations":[{"raw_affiliation_string":"IT Center for Clinical Research, University of L\u00fcbeck, Germany","institution_ids":["https://openalex.org/I9341345"]},{"raw_affiliation_string":"Institute of Medical Informatics, University of L\u00fcbeck, Germany","institution_ids":["https://openalex.org/I9341345"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5077283446"],"corresponding_institution_ids":["https://openalex.org/I9341345"],"apc_list":null,"apc_paid":null,"fwci":3.6593,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.9323917,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"281","issue":null,"first_page":"303","last_page":"307"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9257000088691711,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.858432948589325},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.6105226278305054},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5871577858924866},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.5115026235580444},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4809695780277252},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4601297080516815},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4024980664253235},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.25287705659866333},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14242583513259888},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13577836751937866},{"id":"https://openalex.org/keywords/nursing","display_name":"Nursing","score":0.08939889073371887}],"concepts":[{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.858432948589325},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.6105226278305054},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5871577858924866},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.5115026235580444},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4809695780277252},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4601297080516815},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4024980664253235},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.25287705659866333},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14242583513259888},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13577836751937866},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.08939889073371887},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D005858","descriptor_name":"Germany","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005858","descriptor_name":"Germany","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005858","descriptor_name":"Germany","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057208","descriptor_name":"Health Level Seven","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057208","descriptor_name":"Health Level Seven","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057208","descriptor_name":"Health Level Seven","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti210169","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210169","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210169","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:34042754","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34042754","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti210169","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210169","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210169","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1304428810","display_name":null,"funder_award_id":"(MIRACUM","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G3590280981","display_name":null,"funder_award_id":"01ZZ1802Z","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G5644826747","display_name":null,"funder_award_id":"01ZZ1802","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6955755495","display_name":null,"funder_award_id":"Germany","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8029837981","display_name":null,"funder_award_id":"01ZZ1801A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8904012666","display_name":null,"funder_award_id":"01ZZ1801","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3164144477.pdf","grobid_xml":"https://content.openalex.org/works/W3164144477.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2114843025","https://openalex.org/W2149441684","https://openalex.org/W2883427794","https://openalex.org/W2902328511","https://openalex.org/W2934493193","https://openalex.org/W2942102370","https://openalex.org/W3005435850"],"related_works":["https://openalex.org/W2381929017","https://openalex.org/W2397677514","https://openalex.org/W2914293784","https://openalex.org/W1495820741","https://openalex.org/W2369108811","https://openalex.org/W4323056170","https://openalex.org/W2401910071","https://openalex.org/W2126732312","https://openalex.org/W4302329558","https://openalex.org/W1971571384"],"abstract_inverted_index":{"cBioPortal":[0,65],"is":[1,14,43,112],"a":[2,22,83,115],"commonly":[3],"used":[4],"data":[5,89],"warehousing":[6],"solution":[7],"for":[8,17,39,50],"genomic":[9],"cancer":[10],"studies.":[11],"The":[12],"software":[13],"being":[15],"extended":[16],"patient":[18],"care":[19],"application":[20],"in":[21],"molecular":[23],"tumor":[24],"board":[25],"by":[26,81],"the":[27,31,44,57,74,92,103,106],"MIRACUM":[28],"consortium":[29],"within":[30],"Medical":[32],"Informatics":[33],"Initiative":[34],"Germany.":[35],"A":[36,61],"key":[37],"feature":[38],"this":[40],"use":[41],"case":[42],"ability":[45],"to":[46,87],"enter":[47],"therapy":[48],"recommendations":[49],"individual":[51],"patients,":[52],"which":[53],"requires":[54],"interoperability":[55,80],"with":[56],"hospital":[58],"information":[59],"system.":[60],"RESTful":[62],"interface":[63],"between":[64],"and":[66,90],"an":[67],"external":[68],"mediation":[69],"layer":[70],"was":[71],"selected":[72],"from":[73],"different":[75],"implementation":[76,97],"options.":[77],"It":[78],"achieves":[79],"using":[82],"FHIR":[84,94,104],"capable":[85],"server":[86],"store":[88],"applying":[91],"HL7":[93,108],"Genomics":[95],"Reporting":[96],"guide.":[98],"For":[99],"systems":[100],"not":[101],"supporting":[102],"standard,":[105],"well-established":[107],"Version":[109],"2":[110],"standard":[111],"available":[113],"as":[114],"fallback":[116],"export":[117],"format.":[118]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
