{"id":"https://openalex.org/W3164643806","doi":"https://doi.org/10.3233/shti210073","title":"First Steps to Evaluate an NLP Tool\u2019s Medication Extraction Accuracy from Discharge Letters","display_name":"First Steps to Evaluate an NLP Tool\u2019s Medication Extraction Accuracy from Discharge Letters","publication_year":2021,"publication_date":"2021-05-24","ids":{"openalex":"https://openalex.org/W3164643806","doi":"https://doi.org/10.3233/shti210073","mag":"3164643806","pmid":"https://pubmed.ncbi.nlm.nih.gov/34042898"},"language":"en","primary_location":{"id":"doi:10.3233/shti210073","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210073","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210073","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210073","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003790616","display_name":"Deniz \u00c7al\u0131\u015fkan","orcid":"https://orcid.org/0000-0002-4877-0122"},"institutions":[{"id":"https://openalex.org/I4210088053","display_name":"Universit\u00e4tsklinikum Erlangen","ror":"https://ror.org/0030f2a11","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210088053"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Deniz Caliskan","raw_affiliation_strings":["Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany","institution_ids":["https://openalex.org/I4210088053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006902289","display_name":"Jakob Zierk","orcid":"https://orcid.org/0000-0002-9054-9544"},"institutions":[{"id":"https://openalex.org/I4210088053","display_name":"Universit\u00e4tsklinikum Erlangen","ror":"https://ror.org/0030f2a11","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210088053"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jakob Zierk","raw_affiliation_strings":["Department of Pediatrics and Adolescent Medicine, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany","Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Pediatrics and Adolescent Medicine, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany","institution_ids":["https://openalex.org/I4210088053"]},{"raw_affiliation_string":"Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany","institution_ids":["https://openalex.org/I4210088053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107497880","display_name":"Detlef Kraska","orcid":null},"institutions":[{"id":"https://openalex.org/I4210088053","display_name":"Universit\u00e4tsklinikum Erlangen","ror":"https://ror.org/0030f2a11","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210088053"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Detlef Kraska","raw_affiliation_strings":["Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany","institution_ids":["https://openalex.org/I4210088053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101773732","display_name":"Stefan Schulz","orcid":"https://orcid.org/0000-0001-7222-3287"},"institutions":[{"id":"https://openalex.org/I4210139884","display_name":"Averbis (Germany)","ror":"https://ror.org/03wde7j36","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210139884"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Schulz","raw_affiliation_strings":["Averbis GmbH, Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Averbis GmbH, Freiburg, Germany","institution_ids":["https://openalex.org/I4210139884"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091027914","display_name":"Philipp Daumke","orcid":"https://orcid.org/0000-0003-4437-4840"},"institutions":[{"id":"https://openalex.org/I4210139884","display_name":"Averbis (Germany)","ror":"https://ror.org/03wde7j36","country_code":"DE","type":"company","lineage":["https://openalex.org/I4210139884"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Philipp Daumke","raw_affiliation_strings":["Averbis GmbH, Freiburg, Germany"],"affiliations":[{"raw_affiliation_string":"Averbis GmbH, Freiburg, Germany","institution_ids":["https://openalex.org/I4210139884"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052931994","display_name":"Hans\u2010Ulrich Prokosch","orcid":"https://orcid.org/0000-0001-6200-753X"},"institutions":[{"id":"https://openalex.org/I4210088053","display_name":"Universit\u00e4tsklinikum Erlangen","ror":"https://ror.org/0030f2a11","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210088053"]},{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hans-Ulrich Prokosch","raw_affiliation_strings":["Chair of Medical Informatics, Friedrich-Alexander-University Erlangen-N\u00fcrnberg (FAU), Erlangen, Germany","Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Chair of Medical Informatics, Friedrich-Alexander-University Erlangen-N\u00fcrnberg (FAU), Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]},{"raw_affiliation_string":"Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany","institution_ids":["https://openalex.org/I4210088053"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041778310","display_name":"Lorenz A. Kapsner","orcid":"https://orcid.org/0000-0003-1866-860X"},"institutions":[{"id":"https://openalex.org/I4210088053","display_name":"Universit\u00e4tsklinikum Erlangen","ror":"https://ror.org/0030f2a11","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210088053"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lorenz A. Kapsner","raw_affiliation_strings":["Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Medical Center for Information and Communication Technology, Universit\u00e4tsklinikum Erlangen, Erlangen, Germany","institution_ids":["https://openalex.org/I4210088053"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5003790616"],"corresponding_institution_ids":["https://openalex.org/I4210088053"],"apc_list":null,"apc_paid":null,"fwci":3.1369,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.9171618,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"278","issue":null,"first_page":"224","last_page":"230"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13629","display_name":"Text Readability and Simplification","score":0.9735000133514404,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.780484139919281},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7188812494277954},{"id":"https://openalex.org/keywords/gold-standard","display_name":"Gold standard (test)","score":0.7127590179443359},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6937187910079956},{"id":"https://openalex.org/keywords/security-token","display_name":"Security token","score":0.5916269421577454},{"id":"https://openalex.org/keywords/phrase","display_name":"Phrase","score":0.5766551494598389},{"id":"https://openalex.org/keywords/statement","display_name":"Statement (logic)","score":0.4888591170310974},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4591081142425537},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4524560570716858},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4160536527633667},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3497790992259979},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18548282980918884},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17312896251678467},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.1213131844997406},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09221914410591125}],"concepts":[{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.780484139919281},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7188812494277954},{"id":"https://openalex.org/C40993552","wikidata":"https://www.wikidata.org/wiki/Q514654","display_name":"Gold standard (test)","level":2,"score":0.7127590179443359},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6937187910079956},{"id":"https://openalex.org/C48145219","wikidata":"https://www.wikidata.org/wiki/Q1335365","display_name":"Security token","level":2,"score":0.5916269421577454},{"id":"https://openalex.org/C2776224158","wikidata":"https://www.wikidata.org/wiki/Q187931","display_name":"Phrase","level":2,"score":0.5766551494598389},{"id":"https://openalex.org/C2777026412","wikidata":"https://www.wikidata.org/wiki/Q2684591","display_name":"Statement (logic)","level":2,"score":0.4888591170310974},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4591081142425537},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4524560570716858},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4160536527633667},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3497790992259979},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18548282980918884},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17312896251678467},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.1213131844997406},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09221914410591125},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010351","descriptor_name":"Patient Discharge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010351","descriptor_name":"Patient Discharge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010351","descriptor_name":"Patient Discharge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti210073","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210073","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210073","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:34042898","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34042898","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti210073","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210073","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210073","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5199999809265137}],"awards":[{"id":"https://openalex.org/G1304428810","display_name":null,"funder_award_id":"(MIRACUM","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G4838704522","display_name":null,"funder_award_id":"in part","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G7225624288","display_name":null,"funder_award_id":"This work was","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8029837981","display_name":null,"funder_award_id":"01ZZ1801A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8130184298","display_name":null,"funder_award_id":"FKZ: 01ZZ1801A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G8904012666","display_name":null,"funder_award_id":"01ZZ1801","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320320873","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3164643806.pdf","grobid_xml":"https://content.openalex.org/works/W3164643806.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W34678172","https://openalex.org/W54739280","https://openalex.org/W1126991912","https://openalex.org/W1985297116","https://openalex.org/W2105059534","https://openalex.org/W2114039834","https://openalex.org/W2417831201","https://openalex.org/W2582743722"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W4388335561","https://openalex.org/W2970530566","https://openalex.org/W2039546652","https://openalex.org/W2967478618"],"abstract_inverted_index":{"This":[0],"proof-of-concept":[1],"study":[2],"is":[3],"a":[4,21],"first":[5],"step":[6],"towards":[7],"an":[8],"automated":[9],"scalable":[10],"evaluation":[11],"system":[12],"for":[13],"MIRACUM's":[14],"industry":[15],"partner's":[16],"NLP":[17,37],"tool":[18],"by":[19,35],"using":[20],"gold":[22,50],"standard.":[23,51],"Medication":[24],"phrases":[25],"and":[26,47],"names":[27],"have":[28],"been":[29],"correctly":[30],"identified":[31],"in":[32],"most":[33],"cases":[34],"the":[36,49],"system.":[38],"Future":[39],"effort":[40],"needs":[41],"to":[42],"be":[43],"put":[44],"into":[45],"extending":[46],"validating":[48]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
