{"id":"https://openalex.org/W3164938420","doi":"https://doi.org/10.3233/shti210064","title":"Use of LOINC and SNOMED CT with FHIR for Microbiology Data","display_name":"Use of LOINC and SNOMED CT with FHIR for Microbiology Data","publication_year":2021,"publication_date":"2021-05-24","ids":{"openalex":"https://openalex.org/W3164938420","doi":"https://doi.org/10.3233/shti210064","mag":"3164938420","pmid":"https://pubmed.ncbi.nlm.nih.gov/34042889"},"language":"en","primary_location":{"id":"doi:10.3233/shti210064","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210064","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210064","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210064","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023671416","display_name":"Eugenia Rinaldi","orcid":"https://orcid.org/0000-0003-0343-6400"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Eugenia Rinaldi","raw_affiliation_strings":["Charit\u00e9 Universit\u00e4tsmedizin"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9 Universit\u00e4tsmedizin","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005589873","display_name":"Julian Saas","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139777","display_name":"Berlin Institute of Health at Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/0493xsw21","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Julian Saas","raw_affiliation_strings":["Berlin Institute of Health"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Berlin Institute of Health","institution_ids":["https://openalex.org/I4210139777"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045196355","display_name":"Sylvia Thun","orcid":"https://orcid.org/0000-0002-3346-6806"},"institutions":[{"id":"https://openalex.org/I4210139777","display_name":"Berlin Institute of Health at Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/0493xsw21","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sylvia Thun","raw_affiliation_strings":["Berlin Institute of Health"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Berlin Institute of Health","institution_ids":["https://openalex.org/I4210139777"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5023671416"],"corresponding_institution_ids":["https://openalex.org/I7877124"],"apc_list":null,"apc_paid":null,"fwci":6.5637,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.969896,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"278","issue":null,"first_page":"156","last_page":"162"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.8486630320549011},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7809854745864868},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.6560673713684082},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5735319256782532},{"id":"https://openalex.org/keywords/data-exchange","display_name":"Data exchange","score":0.5435447692871094},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.5167626738548279},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.46438631415367126},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.36028045415878296},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.338100790977478},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3310023546218872},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.17225751280784607}],"concepts":[{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.8486630320549011},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7809854745864868},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.6560673713684082},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5735319256782532},{"id":"https://openalex.org/C15845906","wikidata":"https://www.wikidata.org/wiki/Q1172338","display_name":"Data exchange","level":2,"score":0.5435447692871094},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.5167626738548279},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.46438631415367126},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.36028045415878296},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.338100790977478},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3310023546218872},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.17225751280784607},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000047","descriptor_name":"Academies and Institutes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000047","descriptor_name":"Academies and Institutes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000047","descriptor_name":"Academies and Institutes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033181","descriptor_name":"Information Dissemination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti210064","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210064","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210064","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:34042889","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34042889","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti210064","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti210064","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/SHTI210064","source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.49000000953674316,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3164938420.pdf","grobid_xml":"https://content.openalex.org/works/W3164938420.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W2333152702","https://openalex.org/W2538748485","https://openalex.org/W2611469000","https://openalex.org/W2883427794","https://openalex.org/W2889111096","https://openalex.org/W2897468615","https://openalex.org/W2902328511","https://openalex.org/W2913156988","https://openalex.org/W6608082022"],"related_works":["https://openalex.org/W2405923535","https://openalex.org/W1511848092","https://openalex.org/W1708042184","https://openalex.org/W4226114405","https://openalex.org/W3109801220","https://openalex.org/W2107664094","https://openalex.org/W2135525915","https://openalex.org/W2102204347","https://openalex.org/W2787869728","https://openalex.org/W2353632540"],"abstract_inverted_index":{"Infectious":[0],"diseases":[1],"due":[2],"to":[3,25,66,70,95,118,136,153],"microbial":[4],"resistance":[5],"pose":[6],"a":[7,115,128],"worldwide":[8],"threat":[9],"that":[10,41,85,134],"calls":[11],"for":[12,130,167,176,188],"data":[13,21,31,69,75],"sharing":[14,78],"and":[15,89,109,180,186],"the":[16,51,57,87,90,93,101,105,164,177,181,189],"rapid":[17],"reuse":[18],"of":[19,29,56,73,92,112],"medical":[20],"from":[22,32],"health":[23],"care":[24],"research.":[26],"The":[27,170],"integration":[28],"pathogen-related":[30],"different":[33,80],"hospitals":[34,63,81],"can":[35,147],"yield":[36],"intelligent":[37],"infection":[38],"control":[39],"systems":[40],"detect":[42],"potentially":[43],"dangerous":[44],"germs":[45],"as":[46,48],"early":[47],"possible.":[49],"Within":[50],"use":[52,155],"case":[53],"Infection":[54],"Control":[55],"German":[58],"HiGHmed":[59],"Project,":[60],"eight":[61],"university":[62],"have":[64],"agreed":[65],"share":[67],"their":[68],"enable":[71],"analysis":[72],"various":[74],"sources.":[76],"Data":[77],"among":[79],"requires":[82],"interoperability":[83],"standards":[84,183],"define":[86],"structure":[88,178],"terminology":[91,190],"information":[94,132,142],"be":[96,148],"exchanged.":[97],"This":[98],"article":[99],"presents":[100],"work":[102],"performed":[103],"at":[104],"University":[106],"Hospital":[107],"Charit\u00e9":[108],"Berlin":[110],"Institute":[111],"Health":[113],"towards":[114],"standard":[116,129],"model":[117,137,171],"exchange":[119,133],"microbiology":[120,168],"data.":[121,169],"Fast":[122],"Healthcare":[123],"Interoperability":[124],"Resources":[125],"(FHIR)":[126],"is":[127],"fast":[131],"allows":[135],"healthcare":[138],"information,":[139],"based":[140],"on":[141],"packets":[143],"called":[144],"resources,":[145],"which":[146],"customized":[149],"into":[150],"so-called":[151],"profiles":[152,166],"match":[154],"case-":[156],"specific":[157,165],"needs.":[158],"We":[159],"show":[160],"how":[161],"we":[162],"created":[163],"was":[172],"implemented":[173],"using":[174],"FHIR":[175],"definition,":[179],"international":[182],"SNOMED":[184],"CT":[185],"LOINC":[187],"services.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
