{"id":"https://openalex.org/W3036115115","doi":"https://doi.org/10.3233/shti200164","title":"Integrating the Comparative Toxicogenomic Database in a Human Pharmacogenomic Resource","display_name":"Integrating the Comparative Toxicogenomic Database in a Human Pharmacogenomic Resource","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3036115115","doi":"https://doi.org/10.3233/shti200164","mag":"3036115115","pmid":"https://pubmed.ncbi.nlm.nih.gov/32570388"},"language":"en","primary_location":{"id":"doi:10.3233/shti200164","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti200164","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/shti200164","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076584845","display_name":"Fran\u00e7ois-\u00c9lie Calvier","orcid":null},"institutions":[{"id":"https://openalex.org/I4210157006","display_name":"Centre Hospitalier Universitaire de Saint-\u00c9tienne","ror":"https://ror.org/04pn6vp43","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210157006"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Calvier Fran\u00e7ois-\u00c9lie","raw_affiliation_strings":["Public Health and Medical Information Unit, University Hospital of Saint \u00c9tienne, Saint \u00c9tienne, France"],"affiliations":[{"raw_affiliation_string":"Public Health and Medical Information Unit, University Hospital of Saint \u00c9tienne, Saint \u00c9tienne, France","institution_ids":["https://openalex.org/I4210157006"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068103198","display_name":"C\u00e9dric Bousquet","orcid":"https://orcid.org/0000-0001-9775-2476"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210091279","display_name":"Universit\u00e9 Sorbonne Paris Nord","ror":"https://ror.org/0199hds37","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210091279"]},{"id":"https://openalex.org/I4210157006","display_name":"Centre Hospitalier Universitaire de Saint-\u00c9tienne","ror":"https://ror.org/04pn6vp43","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210157006"]},{"id":"https://openalex.org/I4389425324","display_name":"Laboratoire d'Informatique M\u00e9dicale et d'Ing\u00e9nierie des Connaissances en e-Sant\u00e9","ror":"https://ror.org/01jr1v359","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210091279","https://openalex.org/I4389425324"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bousquet Cedric","raw_affiliation_strings":["Public Health and Medical Information Unit, University Hospital of Saint \u00c9tienne, Saint \u00c9tienne, France","Sorbonne Universit\u00e9, Inserm, universit\u00e9 Paris 13, LIMICS, Paris, France"],"affiliations":[{"raw_affiliation_string":"Public Health and Medical Information Unit, University Hospital of Saint \u00c9tienne, Saint \u00c9tienne, France","institution_ids":["https://openalex.org/I4210157006"]},{"raw_affiliation_string":"Sorbonne Universit\u00e9, Inserm, universit\u00e9 Paris 13, LIMICS, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I4389425324","https://openalex.org/I4210091279","https://openalex.org/I39804081","https://openalex.org/I154526488"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5076584845"],"corresponding_institution_ids":["https://openalex.org/I4210157006"],"apc_list":null,"apc_paid":null,"fwci":1.7064,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.833112,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"270","issue":null,"first_page":"267","last_page":"271"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.977400004863739,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacogenomics","display_name":"Pharmacogenomics","score":0.7998015880584717},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.562206506729126},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5553634166717529},{"id":"https://openalex.org/keywords/toxicogenomics","display_name":"Toxicogenomics","score":0.46913832426071167},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.44314947724342346},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39235934615135193},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33894050121307373},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.2350185513496399},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2010137140750885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14235559105873108},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06862437725067139}],"concepts":[{"id":"https://openalex.org/C170734499","wikidata":"https://www.wikidata.org/wiki/Q1152227","display_name":"Pharmacogenomics","level":2,"score":0.7998015880584717},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.562206506729126},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5553634166717529},{"id":"https://openalex.org/C93231420","wikidata":"https://www.wikidata.org/wiki/Q841450","display_name":"Toxicogenomics","level":4,"score":0.46913832426071167},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.44314947724342346},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39235934615135193},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33894050121307373},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.2350185513496399},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2010137140750885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14235559105873108},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06862437725067139},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010597","descriptor_name":"Pharmacogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015386","descriptor_name":"Hazardous Substances","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D015386","descriptor_name":"Hazardous Substances","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D015386","descriptor_name":"Hazardous Substances","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018511","descriptor_name":"Systems Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/shti200164","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti200164","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:32570388","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32570388","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:HAL:hal-03130189v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-03130189","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"30th Medical Informatics Europe conference (MIE), Apr 2020, Geneva, Switzerland. pp.267-271, &#x27E8;10.3233/SHTI200164&#x27E9;","raw_type":"Conference papers"}],"best_oa_location":{"id":"doi:10.3233/shti200164","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti200164","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W1493577616","https://openalex.org/W4206229536","https://openalex.org/W2061516382","https://openalex.org/W2353370625","https://openalex.org/W2808928947","https://openalex.org/W1588440461","https://openalex.org/W4250247420","https://openalex.org/W583741414","https://openalex.org/W2141341794","https://openalex.org/W438749181"],"abstract_inverted_index":{"Information":[0],"relevant":[1],"to":[2,15,28,33],"pharmacogenomics":[3],"studies":[4],"is":[5],"available":[6,18],"in":[7,87],"several":[8,24],"open":[9],"databases,":[10],"which":[11],"makes":[12],"it":[13],"difficult":[14],"synthetize":[16],"the":[17,21,34,50,61,88],"data.":[19],"Within":[20],"PractikPharma":[22],"project,":[23],"databases":[25],"were":[26],"integrated":[27],"PGxLOD,":[29],"a":[30],"resource":[31],"dedicated":[32],"generation":[35],"and":[36,68],"verification":[37],"of":[38,53],"pharmacogenomic":[39],"influence":[40],"on":[41,56,60],"drug":[42,84],"responses.":[43],"The":[44],"Comparative":[45],"Toxicogenomic":[46],"Database":[47],"(CTD)":[48],"describes":[49],"toxic":[51,73],"effects":[52,70,86],"many":[54],"chemicals":[55,67],"living":[57],"species":[58],"based":[59],"literature.":[62],"Since":[63],"drugs":[64],"are":[65,71],"peculiar":[66,72],"side":[69,85],"effects,":[74],"we":[75],"aimed":[76],"at":[77],"extracting":[78],"information":[79],"from":[80],"CTD":[81],"that":[82],"matches":[83],"human":[89],"specie.":[90]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-02-25T21:11:00.739837","created_date":"2025-10-10T00:00:00"}
