{"id":"https://openalex.org/W3036182514","doi":"https://doi.org/10.3233/shti200138","title":"Data Integration into OMOP CDM for Heterogeneous Clinical Data Collections via HL7 FHIR Bundles and XSLT","display_name":"Data Integration into OMOP CDM for Heterogeneous Clinical Data Collections via HL7 FHIR Bundles and XSLT","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3036182514","doi":"https://doi.org/10.3233/shti200138","mag":"3036182514","pmid":"https://pubmed.ncbi.nlm.nih.gov/32570362"},"language":"en","primary_location":{"id":"doi:10.3233/shti200138","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti200138","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/shti200138","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106695758","display_name":"Patrick Fischer","orcid":"https://orcid.org/0000-0003-4679-5489"},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Fischer Patrick","raw_affiliation_strings":["Institute of Medical Informatics, Faculty of Medicine, Justus-Liebig-University, Giessen, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Informatics, Faculty of Medicine, Justus-Liebig-University, Giessen, Germany","institution_ids":["https://openalex.org/I200763008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039450552","display_name":"Mark R St\u00f6hr","orcid":"https://orcid.org/0000-0002-3628-7280"},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]},{"id":"https://openalex.org/I4210129183","display_name":"German Center for Lung Research","ror":"https://ror.org/03dx11k66","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210129183","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210131615","display_name":"Universities of Giessen and Marburg Lung Center","ror":"https://ror.org/045f0ws19","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210131615"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"St\u00f6hr Mark R.","raw_affiliation_strings":["UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany"],"affiliations":[{"raw_affiliation_string":"UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany","institution_ids":["https://openalex.org/I4210131615","https://openalex.org/I200763008","https://openalex.org/I4210129183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051202449","display_name":"Henning Gall","orcid":"https://orcid.org/0000-0001-7016-7373"},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]},{"id":"https://openalex.org/I4210129183","display_name":"German Center for Lung Research","ror":"https://ror.org/03dx11k66","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210129183","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210131615","display_name":"Universities of Giessen and Marburg Lung Center","ror":"https://ror.org/045f0ws19","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210131615"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gall Henning","raw_affiliation_strings":["UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany"],"affiliations":[{"raw_affiliation_string":"UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany","institution_ids":["https://openalex.org/I4210131615","https://openalex.org/I200763008","https://openalex.org/I4210129183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067314764","display_name":"Achim Michel-Backofen","orcid":null},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michel-Backofen Achim","raw_affiliation_strings":["Data-Integration-Center, Faculty of Medicine, Justus-Liebig-University, Giessen, Germany"],"affiliations":[{"raw_affiliation_string":"Data-Integration-Center, Faculty of Medicine, Justus-Liebig-University, Giessen, Germany","institution_ids":["https://openalex.org/I200763008"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017874388","display_name":"Raphael W. Majeed","orcid":"https://orcid.org/0000-0002-8260-8815"},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]},{"id":"https://openalex.org/I4210129183","display_name":"German Center for Lung Research","ror":"https://ror.org/03dx11k66","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210129183","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210131615","display_name":"Universities of Giessen and Marburg Lung Center","ror":"https://ror.org/045f0ws19","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210131615"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Majeed Raphael W.","raw_affiliation_strings":["UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany"],"affiliations":[{"raw_affiliation_string":"UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany","institution_ids":["https://openalex.org/I4210131615","https://openalex.org/I200763008","https://openalex.org/I4210129183"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5106695758"],"corresponding_institution_ids":["https://openalex.org/I200763008"],"apc_list":null,"apc_paid":null,"fwci":27.082,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.99579099,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"270","issue":null,"first_page":"138","last_page":"142"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12664","display_name":"Clinical practice guidelines implementation","score":0.7940999865531921,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12664","display_name":"Clinical practice guidelines implementation","score":0.7940999865531921,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7350000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.7307999730110168,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7709313035011292},{"id":"https://openalex.org/keywords/xslt","display_name":"XSLT","score":0.7180164456367493},{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.6652918457984924},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5509499907493591},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4609236717224121},{"id":"https://openalex.org/keywords/bundle","display_name":"Bundle","score":0.4489178955554962},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.43152010440826416},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4005272388458252},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3491566479206085},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3444264531135559},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.32424396276474},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16148144006729126},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11176854372024536}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7709313035011292},{"id":"https://openalex.org/C150569060","wikidata":"https://www.wikidata.org/wiki/Q32110","display_name":"XSLT","level":3,"score":0.7180164456367493},{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.6652918457984924},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5509499907493591},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4609236717224121},{"id":"https://openalex.org/C2778134712","wikidata":"https://www.wikidata.org/wiki/Q1047307","display_name":"Bundle","level":2,"score":0.4489178955554962},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.43152010440826416},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4005272388458252},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3491566479206085},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3444264531135559},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.32424396276474},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16148144006729126},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11176854372024536},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039703","descriptor_name":"Logical Observation Identifiers Names and Codes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti200138","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti200138","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:32570362","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32570362","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti200138","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti200138","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2039735462","https://openalex.org/W4297803142","https://openalex.org/W2170279083","https://openalex.org/W2418011696","https://openalex.org/W1868164859","https://openalex.org/W2353223204","https://openalex.org/W933989404","https://openalex.org/W2504958673","https://openalex.org/W2390876725","https://openalex.org/W1963895034"],"abstract_inverted_index":{"Data":[0,56,78],"integration":[1],"is":[2],"an":[3,36,53],"important":[4],"task":[5],"in":[6,106],"medical":[7],"informatics":[8],"and":[9,28],"highly":[10],"impacts":[11],"the":[12,97,103],"gain":[13],"out":[14],"of":[15,99],"existing":[16],"health":[17],"information":[18],"data.":[19],"These":[20],"tasks":[21],"are":[22],"using":[23,92],"implemented":[24],"as":[25,35,81],"extract":[26],"transform":[27],"load":[29],"processes.":[30],"By":[31],"introducing":[32],"HL7":[33,82],"FHIR":[34,83],"intermediate":[37],"format,":[38],"our":[39],"aim":[40],"was":[41,68,79],"to":[42,71,85,88,102],"integrate":[43],"heterogeneous":[44],"data":[45,100],"from":[46],"a":[47,63,107],"German":[48],"pulmonary":[49],"hypertension":[50],"registry":[51],"into":[52],"OMOP":[54,89,104],"Common":[55],"Model.":[57],"First,":[58],"domain":[59],"knowledge":[60],"experts":[61],"defined":[62],"common":[64],"parameter":[65],"set,":[66],"which":[67],"subsequently":[69],"mapped":[70],"standardized":[72],"terminologies":[73],"like":[74],"LOINC":[75],"or":[76],"SNOMED-CT.":[77],"extracted":[80],"Bundle":[84],"be":[86],"transformed":[87,96],"CDM":[90,105],"by":[91],"XSLT.":[93],"We":[94],"successfully":[95],"majority":[98],"elements":[101],"feasible":[108],"time.":[109]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1}],"updated_date":"2026-02-25T21:11:00.739837","created_date":"2025-10-10T00:00:00"}