{"id":"https://openalex.org/W2975868459","doi":"https://doi.org/10.3233/shti190832","title":"Provenance for Biomedical Ontologies with RDF and Git","display_name":"Provenance for Biomedical Ontologies with RDF and Git","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2975868459","doi":"https://doi.org/10.3233/shti190832","mag":"2975868459","pmid":"https://pubmed.ncbi.nlm.nih.gov/31483277"},"language":"en","primary_location":{"id":"doi:10.3233/shti190832","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti190832","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/shti190832","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039450552","display_name":"Mark R St\u00f6hr","orcid":"https://orcid.org/0000-0002-3628-7280"},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]},{"id":"https://openalex.org/I4210129183","display_name":"German Center for Lung Research","ror":"https://ror.org/03dx11k66","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210129183","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210131615","display_name":"Universities of Giessen and Marburg Lung Center","ror":"https://ror.org/045f0ws19","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210131615"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"St\u00f6hr Mark R.","raw_affiliation_strings":["UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany","institution_ids":["https://openalex.org/I4210131615","https://openalex.org/I200763008","https://openalex.org/I4210129183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110709590","display_name":"Andreas G\u00fcnther","orcid":"https://orcid.org/0000-0002-2187-0975"},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]},{"id":"https://openalex.org/I4210129183","display_name":"German Center for Lung Research","ror":"https://ror.org/03dx11k66","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210129183","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210131615","display_name":"Universities of Giessen and Marburg Lung Center","ror":"https://ror.org/045f0ws19","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210131615"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"G\u00fcnther Andreas","raw_affiliation_strings":["UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany","institution_ids":["https://openalex.org/I4210131615","https://openalex.org/I200763008","https://openalex.org/I4210129183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017874388","display_name":"Raphael W. Majeed","orcid":"https://orcid.org/0000-0002-8260-8815"},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]},{"id":"https://openalex.org/I4210129183","display_name":"German Center for Lung Research","ror":"https://ror.org/03dx11k66","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210129183","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210131615","display_name":"Universities of Giessen and Marburg Lung Center","ror":"https://ror.org/045f0ws19","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210131615"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Majeed Raphael W.","raw_affiliation_strings":["UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UGMLC, German Center for Lung Research (DZL), Justus-Liebig-University, Giessen, Germany","institution_ids":["https://openalex.org/I4210131615","https://openalex.org/I200763008","https://openalex.org/I4210129183"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.8265,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.76544928,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"267","issue":null,"first_page":"230","last_page":"237"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9758999943733215,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.8245348930358887},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7377910614013672},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7334376573562622},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.6616246700286865},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6110485792160034},{"id":"https://openalex.org/keywords/rdf-schema","display_name":"RDF Schema","score":0.5309146642684937},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.49069058895111084},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.48427122831344604},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4392213523387909},{"id":"https://openalex.org/keywords/software-versioning","display_name":"Software versioning","score":0.42774662375450134},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.39757540822029114},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3585730493068695},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32737427949905396},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.2978922724723816},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.15709355473518372}],"concepts":[{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.8245348930358887},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7377910614013672},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7334376573562622},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.6616246700286865},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6110485792160034},{"id":"https://openalex.org/C15657843","wikidata":"https://www.wikidata.org/wiki/Q1751819","display_name":"RDF Schema","level":5,"score":0.5309146642684937},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.49069058895111084},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.48427122831344604},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4392213523387909},{"id":"https://openalex.org/C198140048","wikidata":"https://www.wikidata.org/wiki/Q10859422","display_name":"Software versioning","level":3,"score":0.42774662375450134},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.39757540822029114},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3585730493068695},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32737427949905396},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.2978922724723816},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.15709355473518372},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073458","descriptor_name":"Data Warehousing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073458","descriptor_name":"Data Warehousing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000073458","descriptor_name":"Data Warehousing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012189","descriptor_name":"Retrospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti190832","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti190832","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:31483277","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31483277","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti190832","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti190832","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.6100000143051147,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4206665951","https://openalex.org/W2079781157","https://openalex.org/W4296056063","https://openalex.org/W3171256892","https://openalex.org/W3107051279","https://openalex.org/W4301152651","https://openalex.org/W3082761338","https://openalex.org/W1935612762","https://openalex.org/W2602535883","https://openalex.org/W1547764714"],"abstract_inverted_index":{"The":[0,38],"German":[1],"Center":[2],"for":[3,48,69,79,144],"Lung":[4],"Research":[5],"(DZL)":[6],"is":[7,44,61,114],"a":[8,34,86,104],"research":[9,24],"network":[10],"with":[11],"the":[12,41,52,64,73,160,163],"aim":[13],"of":[14,40,89,140],"researching":[15],"respiratory":[16],"diseases.":[17],"In":[18],"order":[19],"to":[20],"enable":[21],"consortium-wide":[22],"retrospective":[23],"and":[25,72,81,97,112,118,155],"prospective":[26],"patient":[27],"recruitment,":[28],"we":[29,50,149],"perform":[30],"data":[31,36,90,158],"integration":[32],"into":[33,162],"central":[35],"warehouse.":[37],"enhancements":[39],"underlying":[42],"ontology":[43,70],"an":[45,137,151],"ongoing":[46],"process":[47],"which":[49],"developed":[51,150],"Collaborative":[53],"Metadata":[54],"Repository":[55],"(CoMetaR)":[56],"tool.":[57],"Its":[58],"technical":[59],"infrastructure":[60],"based":[62],"on":[63],"Resource":[65],"Description":[66],"Framework":[67],"(RDF)":[68],"representation":[71],"distributed":[74],"version":[75],"control":[76],"system":[77],"Git":[78,119],"storage":[80],"versioning.":[82],"Ontology":[83],"development":[84],"involves":[85],"considerable":[87],"amount":[88],"curation.":[91],"Data":[92],"provenance":[93,130,146,157],"improves":[94],"its":[95],"feasibility":[96],"quality.":[98],"Especially":[99],"in":[100,132],"collaborative":[101],"metadata":[102,129],"development,":[103],"comprehensive":[105],"annotation":[106],"about":[107],"\"who":[108],"contributed":[109],"what,":[110],"when":[111],"why\"":[113],"essential.":[115],"Although":[116],"RDF":[117,142,165],"versioning":[120],"repositories":[121],"are":[122],"commonly":[123],"used,":[124],"no":[125],"existing":[126],"solution":[127],"captures":[128],"information":[131],"sufficient":[133],"detail.":[134],"We":[135],"propose":[136],"enhanced":[138],"composition":[139],"standardized":[141],"statements":[143],"detailed":[145],"representation.":[147],"Additionally,":[148],"algorithm":[152],"that":[153],"extracts":[154],"translates":[156],"from":[159],"repository":[161],"proposed":[164],"statements.":[166]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
