{"id":"https://openalex.org/W2991456924","doi":"https://doi.org/10.3233/shti190677","title":"Linking Exome Sequencing Data with Drug Response Aberrations","display_name":"Linking Exome Sequencing Data with Drug Response Aberrations","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2991456924","doi":"https://doi.org/10.3233/shti190677","mag":"2991456924","pmid":"https://pubmed.ncbi.nlm.nih.gov/31438372"},"language":"en","primary_location":{"id":"doi:10.3233/shti190677","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti190677","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/shti190677","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049952262","display_name":"Konstantinos Kyriakidis","orcid":"https://orcid.org/0000-0002-1696-4838"},"institutions":[{"id":"https://openalex.org/I21370196","display_name":"Aristotle University of Thessaloniki","ror":"https://ror.org/02j61yw88","country_code":"GR","type":"education","lineage":["https://openalex.org/I21370196"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Kyriakidis Konstantinos","raw_affiliation_strings":["Lab. of Biological Chemistry, School of Medicine, Aristotle University of Thessaloniki, Greece"],"affiliations":[{"raw_affiliation_string":"Lab. of Biological Chemistry, School of Medicine, Aristotle University of Thessaloniki, Greece","institution_ids":["https://openalex.org/I21370196"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088423943","display_name":"Alexandra Charalampidou","orcid":null},"institutions":[{"id":"https://openalex.org/I21370196","display_name":"Aristotle University of Thessaloniki","ror":"https://ror.org/02j61yw88","country_code":"GR","type":"education","lineage":["https://openalex.org/I21370196"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Charalampidou Alexandra","raw_affiliation_strings":["Scientific Computing Office, Information Technology Centre, Aristotle University of Thessaloniki, Greece"],"affiliations":[{"raw_affiliation_string":"Scientific Computing Office, Information Technology Centre, Aristotle University of Thessaloniki, Greece","institution_ids":["https://openalex.org/I21370196"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036029445","display_name":"Pantelis Natsiavas","orcid":"https://orcid.org/0000-0002-4061-9815"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210091279","display_name":"Universit\u00e9 Sorbonne Paris Nord","ror":"https://ror.org/0199hds37","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210091279"]},{"id":"https://openalex.org/I4210134249","display_name":"Centre for Research and Technology Hellas","ror":"https://ror.org/03bndpq63","country_code":"GR","type":"facility","lineage":["https://openalex.org/I4210134249"]},{"id":"https://openalex.org/I4210161954","display_name":"D\u00e9partement d'Informatique","ror":"https://ror.org/05y6rqs46","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2746051580","https://openalex.org/I29607241","https://openalex.org/I4210159245","https://openalex.org/I4210161954"]},{"id":"https://openalex.org/I4389425324","display_name":"Laboratoire d'Informatique M\u00e9dicale et d'Ing\u00e9nierie des Connaissances en e-Sant\u00e9","ror":"https://ror.org/01jr1v359","country_code":null,"type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210091279","https://openalex.org/I4389425324"]}],"countries":["FR","GR"],"is_corresponding":false,"raw_author_name":"Natsiavas Pantelis","raw_affiliation_strings":["Institute of Applied Biosciences, Centre for Research & Technology Hellas, Thermi, Thessaloniki, Greece","Sorbonne Universit\u00e9, INSERM, Univ Paris 13, Laboratoire d'Informatique M\u00e9dicale et d'Ing\u00e9nierie des Connaissances pour la e-Sant\u00e9, LIMICS, F-75006 Paris, France"],"affiliations":[{"raw_affiliation_string":"Institute of Applied Biosciences, Centre for Research & Technology Hellas, Thermi, Thessaloniki, Greece","institution_ids":["https://openalex.org/I4210134249"]},{"raw_affiliation_string":"Sorbonne Universit\u00e9, INSERM, Univ Paris 13, Laboratoire d'Informatique M\u00e9dicale et d'Ing\u00e9nierie des Connaissances pour la e-Sant\u00e9, LIMICS, F-75006 Paris, France","institution_ids":["https://openalex.org/I4210161954","https://openalex.org/I4389425324","https://openalex.org/I4210091279","https://openalex.org/I39804081","https://openalex.org/I154526488"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056513069","display_name":"Ioannis S. Vizirianakis","orcid":"https://orcid.org/0000-0003-1459-9774"},"institutions":[{"id":"https://openalex.org/I21370196","display_name":"Aristotle University of Thessaloniki","ror":"https://ror.org/02j61yw88","country_code":"GR","type":"education","lineage":["https://openalex.org/I21370196"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Vizirianakis Ioannis S.","raw_affiliation_strings":["Lab. of Pharmacology, School of Pharmacy, Aristotle University of Thessaloniki, Greece"],"affiliations":[{"raw_affiliation_string":"Lab. of Pharmacology, School of Pharmacy, Aristotle University of Thessaloniki, Greece","institution_ids":["https://openalex.org/I21370196"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060458297","display_name":"Andigoni Malousi","orcid":"https://orcid.org/0000-0002-1968-7020"},"institutions":[{"id":"https://openalex.org/I21370196","display_name":"Aristotle University of Thessaloniki","ror":"https://ror.org/02j61yw88","country_code":"GR","type":"education","lineage":["https://openalex.org/I21370196"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Malousi Andigoni","raw_affiliation_strings":["Lab. of Biological Chemistry, School of Medicine, Aristotle University of Thessaloniki, Greece"],"affiliations":[{"raw_affiliation_string":"Lab. of Biological Chemistry, School of Medicine, Aristotle University of Thessaloniki, Greece","institution_ids":["https://openalex.org/I21370196"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5049952262"],"corresponding_institution_ids":["https://openalex.org/I21370196"],"apc_list":null,"apc_paid":null,"fwci":0.765,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.76884422,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"264","issue":null,"first_page":"1845","last_page":"1846"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9786999821662903,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pharmacogenomics","display_name":"Pharmacogenomics","score":0.7096160650253296},{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.6736060976982117},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6546860337257385},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6356313228607178},{"id":"https://openalex.org/keywords/exome","display_name":"Exome","score":0.6147407293319702},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5985892415046692},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5066898465156555},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.481803834438324},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.46300438046455383},{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.45309334993362427},{"id":"https://openalex.org/keywords/drug-response","display_name":"Drug response","score":0.45066842436790466},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35590890049934387},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3530961275100708},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.2879590392112732},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2484804093837738},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20676729083061218},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.14077308773994446},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08179795742034912},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.06730237603187561},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06669268012046814},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.06618407368659973}],"concepts":[{"id":"https://openalex.org/C170734499","wikidata":"https://www.wikidata.org/wiki/Q1152227","display_name":"Pharmacogenomics","level":2,"score":0.7096160650253296},{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.6736060976982117},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6546860337257385},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6356313228607178},{"id":"https://openalex.org/C10590036","wikidata":"https://www.wikidata.org/wiki/Q417664","display_name":"Exome","level":5,"score":0.6147407293319702},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5985892415046692},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5066898465156555},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.481803834438324},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.46300438046455383},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.45309334993362427},{"id":"https://openalex.org/C2994119904","wikidata":"https://www.wikidata.org/wiki/Q1251001","display_name":"Drug response","level":3,"score":0.45066842436790466},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35590890049934387},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3530961275100708},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.2879590392112732},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2484804093837738},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20676729083061218},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.14077308773994446},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08179795742034912},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.06730237603187561},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06669268012046814},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.06618407368659973},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C87717796","wikidata":"https://www.wikidata.org/wiki/Q146326","display_name":"Environmental engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004305","descriptor_name":"Dose-Response Relationship, Drug","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004305","descriptor_name":"Dose-Response Relationship, Drug","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004305","descriptor_name":"Dose-Response Relationship, Drug","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059472","descriptor_name":"Exome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/shti190677","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti190677","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:31438372","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31438372","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.3233/shti190677","is_oa":true,"landing_page_url":"https://doi.org/10.3233/shti190677","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"sustainable_development_goals":[{"score":0.5400000214576721,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2494489566","https://openalex.org/W4231349869","https://openalex.org/W2896304141","https://openalex.org/W4239789534","https://openalex.org/W4387225326","https://openalex.org/W2019271482","https://openalex.org/W1537547840","https://openalex.org/W2093932542","https://openalex.org/W4392425672","https://openalex.org/W2563611238"],"abstract_inverted_index":{"Next-generation":[0],"sequencing":[1,71],"has":[2],"prompted":[3],"the":[4,21,25],"development":[5],"of":[6,29],"numerous":[7],"-omics":[8],"applications.":[9],"Along":[10],"with":[11],"experimental":[12],"procedures,":[13],"various":[14],"computational":[15],"pipelines":[16,32],"became":[17],"available":[18],"to":[19,62],"address":[20],"inherent":[22],"complexities":[23],"concerning":[24],"volume":[26],"and":[27,35],"quality":[28],"data.":[30],"These":[31],"are":[33],"effective":[34],"routinely":[36],"applied;":[37],"however,":[38],"interpreting":[39],"their":[40],"outcomes":[41],"into":[42,70],"actionable":[43],"evidence":[44],"is":[45],"still":[46],"poorly":[47],"addressed.":[48],"In":[49],"this":[50,52],"context,":[51],"work":[53],"proposes":[54],"a":[55],"method":[56],"for":[57],"translating":[58],"patient":[59],"genomic":[60],"profiles":[61],"drug":[63],"response":[64],"aberrations":[65],"by":[66],"integrating":[67],"pharmacogenomic":[68],"data":[69,72],"analysis":[73],"pipelines.":[74]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-02-25T21:11:00.739837","created_date":"2025-10-10T00:00:00"}
