{"id":"https://openalex.org/W4388049176","doi":"https://doi.org/10.3233/jifs-231367","title":"Optimization of MLVA loci combination using metaheuristic methods","display_name":"Optimization of MLVA loci combination using metaheuristic methods","publication_year":2023,"publication_date":"2023-10-31","ids":{"openalex":"https://openalex.org/W4388049176","doi":"https://doi.org/10.3233/jifs-231367"},"language":"en","primary_location":{"id":"doi:10.3233/jifs-231367","is_oa":false,"landing_page_url":"https://doi.org/10.3233/jifs-231367","pdf_url":null,"source":{"id":"https://openalex.org/S179157397","display_name":"Journal of Intelligent & Fuzzy Systems","issn_l":"1064-1246","issn":["1064-1246","1875-8967"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent &amp; Fuzzy Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029222157","display_name":"G. Ng","orcid":"https://orcid.org/0000-0003-4957-6740"},"institutions":[{"id":"https://openalex.org/I173029219","display_name":"Multimedia University","ror":"https://ror.org/04zrbnc33","country_code":"MY","type":"education","lineage":["https://openalex.org/I173029219"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Grace Yee Lin Ng","raw_affiliation_strings":["Faculty of Information Science and Technology, Multimedia University, Jalan Ayer Keroh Lama, Bukit Beruang, Melaka, Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Science and Technology, Multimedia University, Jalan Ayer Keroh Lama, Bukit Beruang, Melaka, Malaysia","institution_ids":["https://openalex.org/I173029219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048958474","display_name":"Kim Loon Ang","orcid":null},"institutions":[{"id":"https://openalex.org/I173029219","display_name":"Multimedia University","ror":"https://ror.org/04zrbnc33","country_code":"MY","type":"education","lineage":["https://openalex.org/I173029219"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Kim Loon Ang","raw_affiliation_strings":["Faculty of Information Science and Technology, Multimedia University, Jalan Ayer Keroh Lama, Bukit Beruang, Melaka, Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Science and Technology, Multimedia University, Jalan Ayer Keroh Lama, Bukit Beruang, Melaka, Malaysia","institution_ids":["https://openalex.org/I173029219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053906728","display_name":"Shing Chiang Tan","orcid":"https://orcid.org/0000-0002-1267-1894"},"institutions":[{"id":"https://openalex.org/I173029219","display_name":"Multimedia University","ror":"https://ror.org/04zrbnc33","country_code":"MY","type":"education","lineage":["https://openalex.org/I173029219"]}],"countries":["MY"],"is_corresponding":true,"raw_author_name":"Shing Chiang Tan","raw_affiliation_strings":["Faculty of Information Science and Technology, Multimedia University, Jalan Ayer Keroh Lama, Bukit Beruang, Melaka, Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Science and Technology, Multimedia University, Jalan Ayer Keroh Lama, Bukit Beruang, Melaka, Malaysia","institution_ids":["https://openalex.org/I173029219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040545448","display_name":"Chia Sui Ong","orcid":"https://orcid.org/0000-0002-4130-6861"},"institutions":[{"id":"https://openalex.org/I173029219","display_name":"Multimedia University","ror":"https://ror.org/04zrbnc33","country_code":"MY","type":"education","lineage":["https://openalex.org/I173029219"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Chia Sui Ong","raw_affiliation_strings":["Faculty of Information Science and Technology, Multimedia University, Jalan Ayer Keroh Lama, Bukit Beruang, Melaka, Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Science and Technology, Multimedia University, Jalan Ayer Keroh Lama, Bukit Beruang, Melaka, Malaysia","institution_ids":["https://openalex.org/I173029219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011864259","display_name":"Yun Fong Ngeow","orcid":"https://orcid.org/0000-0002-1011-762X"},"institutions":[{"id":"https://openalex.org/I931681460","display_name":"Universiti Tunku Abdul Rahman","ror":"https://ror.org/050pq4m56","country_code":"MY","type":"education","lineage":["https://openalex.org/I931681460"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Yun Fong Ngeow","raw_affiliation_strings":["Dr. Wu Lien-Teh Centre for Research in Communicable Diseases, M. Kandiah Faculty of Medicine and Health Sciences, Universiti Tunku Abdul Rahman, Jalan Sungai Long, Bandar Sungai Long, Kajang, Selangor, Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dr. Wu Lien-Teh Centre for Research in Communicable Diseases, M. Kandiah Faculty of Medicine and Health Sciences, Universiti Tunku Abdul Rahman, Jalan Sungai Long, Bandar Sungai Long, Kajang, Selangor, Malaysia","institution_ids":["https://openalex.org/I931681460"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5053906728"],"corresponding_institution_ids":["https://openalex.org/I173029219"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.30905398,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"45","issue":"6","first_page":"12123","last_page":"12142"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/multiple-loci-vntr-analysis","display_name":"Multiple Loci VNTR Analysis","score":0.8175032138824463},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.650959312915802},{"id":"https://openalex.org/keywords/metaheuristic","display_name":"Metaheuristic","score":0.5880928039550781},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.4806724488735199},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3941303789615631},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3358990550041199},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3040415048599243},{"id":"https://openalex.org/keywords/tandem-repeat","display_name":"Tandem repeat","score":0.2914597988128662},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2646060287952423},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24978238344192505},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.21878379583358765},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21129918098449707}],"concepts":[{"id":"https://openalex.org/C28245876","wikidata":"https://www.wikidata.org/wiki/Q2396681","display_name":"Multiple Loci VNTR Analysis","level":5,"score":0.8175032138824463},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.650959312915802},{"id":"https://openalex.org/C109718341","wikidata":"https://www.wikidata.org/wiki/Q1385229","display_name":"Metaheuristic","level":2,"score":0.5880928039550781},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.4806724488735199},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3941303789615631},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3358990550041199},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3040415048599243},{"id":"https://openalex.org/C27149982","wikidata":"https://www.wikidata.org/wiki/Q3456514","display_name":"Tandem repeat","level":4,"score":0.2914597988128662},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2646060287952423},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24978238344192505},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.21878379583358765},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21129918098449707},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3233/jifs-231367","is_oa":false,"landing_page_url":"https://doi.org/10.3233/jifs-231367","pdf_url":null,"source":{"id":"https://openalex.org/S179157397","display_name":"Journal of Intelligent & Fuzzy Systems","issn_l":"1064-1246","issn":["1064-1246","1875-8967"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent &amp; Fuzzy Systems","raw_type":"journal-article"},{"id":"pmh:oai:shdl.mmu.edu.my:11994","is_oa":false,"landing_page_url":"http://shdl.mmu.edu.my/11994/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196753","display_name":"Siti Hasmah Digital Library-MMU Institutiona Repository (Multimedia University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173029219","host_organization_name":"Multimedia University","host_organization_lineage":["https://openalex.org/I173029219"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.7400000095367432,"id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":64,"referenced_works":["https://openalex.org/W796286943","https://openalex.org/W1488262302","https://openalex.org/W1544087105","https://openalex.org/W1595159159","https://openalex.org/W1971403296","https://openalex.org/W1975710631","https://openalex.org/W1982664628","https://openalex.org/W1992643433","https://openalex.org/W1995203050","https://openalex.org/W2002279131","https://openalex.org/W2004479814","https://openalex.org/W2017828086","https://openalex.org/W2032655726","https://openalex.org/W2041282815","https://openalex.org/W2060593788","https://openalex.org/W2061554433","https://openalex.org/W2070497517","https://openalex.org/W2076347392","https://openalex.org/W2084792706","https://openalex.org/W2085833110","https://openalex.org/W2092713296","https://openalex.org/W2098618245","https://openalex.org/W2101798689","https://openalex.org/W2106534163","https://openalex.org/W2110741640","https://openalex.org/W2112814753","https://openalex.org/W2114034064","https://openalex.org/W2119698983","https://openalex.org/W2122274805","https://openalex.org/W2132397638","https://openalex.org/W2152841984","https://openalex.org/W2153013597","https://openalex.org/W2158862451","https://openalex.org/W2164198835","https://openalex.org/W2165822919","https://openalex.org/W2212184042","https://openalex.org/W2293576059","https://openalex.org/W2567462091","https://openalex.org/W2569214105","https://openalex.org/W2767737113","https://openalex.org/W2777794149","https://openalex.org/W2777994090","https://openalex.org/W2788327314","https://openalex.org/W2804246283","https://openalex.org/W2805967232","https://openalex.org/W2889413012","https://openalex.org/W2897728833","https://openalex.org/W2902593458","https://openalex.org/W2919979744","https://openalex.org/W2936216305","https://openalex.org/W2943381976","https://openalex.org/W2985845430","https://openalex.org/W2986344886","https://openalex.org/W2994873403","https://openalex.org/W2995236902","https://openalex.org/W2998666873","https://openalex.org/W3071309531","https://openalex.org/W3119051141","https://openalex.org/W3156700010","https://openalex.org/W4250503569","https://openalex.org/W4297180060","https://openalex.org/W4306386327","https://openalex.org/W4376878640","https://openalex.org/W4381839761"],"related_works":["https://openalex.org/W117643304","https://openalex.org/W2113960960","https://openalex.org/W2592096152","https://openalex.org/W2075864646","https://openalex.org/W19871479","https://openalex.org/W2048686716","https://openalex.org/W2984674385","https://openalex.org/W2041625677","https://openalex.org/W2236896040","https://openalex.org/W1982664628"],"abstract_inverted_index":{"Multilocus":[0],"variable":[1,17],"number":[2,18,124],"tandem":[3,19],"repeat":[4,10,20],"analysis":[5],"(MLVA)":[6],"utilizes":[7],"short":[8],"DNA":[9],"polymorphism":[11],"in":[12,104,152],"genomes,":[13],"which":[14,145],"is":[15,30,46,56,161,184],"termed":[16],"(VNTR),":[21],"to":[22,31,38,47,61,73,85,120,186],"differentiate":[23],"closely":[24],"related":[25],"organisms.":[26],"One":[27],"research":[28],"challenge":[29],"find":[32,62,86],"an":[33,49,58,87,117],"optimal":[34,63,88],"set":[35,89,289],"of":[36,76,90,125,149,170,191,290],"VNTR":[37],"distinguish":[39],"different":[40],"members":[41],"accurately.":[42],"An":[43],"intuitive":[44],"method":[45,55,243],"use":[48],"exhaustive":[50,217],"search":[51,159,168,218],"method.":[52],"However,":[53,111],"this":[54,79,109],"not":[57],"efficient":[59],"way":[60],"solutions":[64],"from":[65,116,201],"a":[66,140,153,171,192,202,206,227,237,251,264,285],"dataset":[67],"comprising":[68],"many":[69],"attributes":[70],"(loci)":[71],"due":[72],"the":[74,122,147,158,167,188,281],"curse":[75],"dimensionality.":[77],"In":[78],"study,":[80],"metaheuristic":[81,173,220,257],"methods":[82,221,258,283],"are":[83,210,222,248],"proposed":[84,103],"loci":[91,126,151,193,291],"combination.":[92,194,292],"Basic":[93],"genetic":[94,99],"algorithm":[95,100],"(BGA)":[96],"and":[97,205,219,234,246,274],"modified":[98],"(MGA)":[101],"were":[102],"our":[105],"previous":[106],"work":[107],"for":[108,127,137,250],"purpose.":[110],"they":[112],"require":[113],"prior":[114],"knowledge":[115],"experienced":[118],"user":[119],"specify":[121],"minimum":[123],"achieving":[128],"good":[129],"results.":[130],"To":[131],"impose":[132],"no":[133],"such":[134],"expertise":[135],"requirement":[136],"parameter":[138],"setting,":[139],"GA":[141,242],"with":[142,254],"Duplicates":[143],"(GAD),":[144],"allows":[146],"inclusion":[148],"duplicated":[150],"chromosome":[154],"(potential":[155],"solution)":[156],"during":[157],"process,":[160],"developed.":[162],"The":[163,212,240,267],"study":[164],"also":[165],"investigates":[166],"performance":[169,228,252],"hybrid":[172],"method,":[174],"namely":[175],"quantum-inspired":[176],"differential":[177],"evolution":[178],"(QDE).":[179],"Hunter-Gaston":[180],"Discriminatory":[181],"Index":[182],"(HGDI)":[183],"used":[185],"indicate":[187],"discriminatory":[189],"power":[190],"Two":[195],"Mycobacterium":[196],"tuberculosis":[197],"MLVA":[198,261],"datasets":[199,262],"obtained":[200,214],"public":[203],"portal":[204],"local":[207],"laboratory":[208],"respectively,":[209],"used.":[211],"results":[213,269],"by":[215,226,236,263],"using":[216,259,284],"first":[223],"compared,":[224],"followed":[225],"comparison":[229,253],"among":[230],"BGA,":[231],"MGA,":[232],"GAD,":[233],"QDE":[235,247,275],"statistical":[238,265,268],"approach.":[239,266],"best-performing":[241],"(i.e.,":[244],"GAD)":[245],"selected":[249],"several":[255],"recent":[256,282],"both":[260,272],"show":[270],"that":[271],"GAD":[273],"could":[276],"achieve":[277],"higher":[278],"HGDI":[279],"than":[280],"small":[286],"but":[287],"informative":[288]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
