{"id":"https://openalex.org/W4393067993","doi":"https://doi.org/10.3233/jifs-219337","title":"Identification of horizontal gene transference by means of anomaly detection and natural language-inspired interpretable embeddings","display_name":"Identification of horizontal gene transference by means of anomaly detection and natural language-inspired interpretable embeddings","publication_year":2024,"publication_date":"2024-03-22","ids":{"openalex":"https://openalex.org/W4393067993","doi":"https://doi.org/10.3233/jifs-219337"},"language":"en","primary_location":{"id":"doi:10.3233/jifs-219337","is_oa":false,"landing_page_url":"https://doi.org/10.3233/jifs-219337","pdf_url":null,"source":{"id":"https://openalex.org/S179157397","display_name":"Journal of Intelligent & Fuzzy Systems","issn_l":"1064-1246","issn":["1064-1246","1875-8967"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent &amp; Fuzzy Systems: Applications in Engineering and Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056408552","display_name":"V\u00edctor Lomas-Barri\u00e9","orcid":"https://orcid.org/0000-0003-2281-0891"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Victor Lomas-Barrie","raw_affiliation_strings":["Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, M\u00e9xico"],"raw_orcid":"https://orcid.org/0000-0003-2281-0891","affiliations":[{"raw_affiliation_string":"Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094218108","display_name":"Michelle Reyes-Camacho","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Michelle Reyes-Camacho","raw_affiliation_strings":["Postgraduation Program in Computer Science, Universidad Nacional Aut\u00f3noma de M\u00e9xico, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Postgraduation Program in Computer Science, Universidad Nacional Aut\u00f3noma de M\u00e9xico, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023915084","display_name":"Antonio Neme","orcid":"https://orcid.org/0000-0002-9952-1943"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Antonio Neme","raw_affiliation_strings":["Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, M\u00e9xico"],"raw_orcid":"https://orcid.org/0000-0002-9952-1943","affiliations":[{"raw_affiliation_string":"Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5023915084"],"corresponding_institution_ids":["https://openalex.org/I8961855"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03477911,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"50","issue":"2","first_page":"229","last_page":"240"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11512","display_name":"Anomaly Detection Techniques and Applications","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7479409575462341},{"id":"https://openalex.org/keywords/anomaly","display_name":"Anomaly (physics)","score":0.6368528008460999},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6302478909492493},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5646738409996033},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5314159989356995},{"id":"https://openalex.org/keywords/natural","display_name":"Natural (archaeology)","score":0.5302186608314514},{"id":"https://openalex.org/keywords/anomaly-detection","display_name":"Anomaly detection","score":0.5013325214385986},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3789834976196289},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.2993713617324829},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.16393864154815674},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1083810031414032},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.06537207961082458},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.03988856077194214}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7479409575462341},{"id":"https://openalex.org/C12997251","wikidata":"https://www.wikidata.org/wiki/Q567560","display_name":"Anomaly (physics)","level":2,"score":0.6368528008460999},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6302478909492493},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5646738409996033},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5314159989356995},{"id":"https://openalex.org/C2776608160","wikidata":"https://www.wikidata.org/wiki/Q4785462","display_name":"Natural (archaeology)","level":2,"score":0.5302186608314514},{"id":"https://openalex.org/C739882","wikidata":"https://www.wikidata.org/wiki/Q3560506","display_name":"Anomaly detection","level":2,"score":0.5013325214385986},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3789834976196289},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.2993713617324829},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.16393864154815674},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1083810031414032},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.06537207961082458},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.03988856077194214},{"id":"https://openalex.org/C26873012","wikidata":"https://www.wikidata.org/wiki/Q214781","display_name":"Condensed matter physics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/jifs-219337","is_oa":false,"landing_page_url":"https://doi.org/10.3233/jifs-219337","pdf_url":null,"source":{"id":"https://openalex.org/S179157397","display_name":"Journal of Intelligent & Fuzzy Systems","issn_l":"1064-1246","issn":["1064-1246","1875-8967"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent &amp; Fuzzy Systems: Applications in Engineering and Technology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1499399937","https://openalex.org/W1508799336","https://openalex.org/W1599377382","https://openalex.org/W1705986201","https://openalex.org/W1995443851","https://openalex.org/W2015887370","https://openalex.org/W2017669815","https://openalex.org/W2026405416","https://openalex.org/W2067312173","https://openalex.org/W2074231493","https://openalex.org/W2100945839","https://openalex.org/W2102075559","https://openalex.org/W2115627867","https://openalex.org/W2146622826","https://openalex.org/W2157486063","https://openalex.org/W2174612238","https://openalex.org/W2309333032","https://openalex.org/W2476250817","https://openalex.org/W2516144223","https://openalex.org/W2766738717","https://openalex.org/W2951825561","https://openalex.org/W3009784754","https://openalex.org/W3025727691","https://openalex.org/W3026482234","https://openalex.org/W3173367943","https://openalex.org/W4205443759","https://openalex.org/W4211113529","https://openalex.org/W4285495645","https://openalex.org/W4293723585","https://openalex.org/W4309562323","https://openalex.org/W4360813093","https://openalex.org/W4386168871","https://openalex.org/W4388496704","https://openalex.org/W6948510388"],"related_works":["https://openalex.org/W2806741695","https://openalex.org/W4290647774","https://openalex.org/W3189286258","https://openalex.org/W3207797160","https://openalex.org/W3210364259","https://openalex.org/W4300558037","https://openalex.org/W2912112202","https://openalex.org/W2667207928","https://openalex.org/W4377864969","https://openalex.org/W3030345572"],"abstract_inverted_index":{"Horizontal":[0],"gene":[1],"transference":[2,66],"is":[3,25,35,67,92,127,171,211,218],"a":[4,19,104,174,186,203,206,242,263,276,288,302],"biological":[5],"process":[6,24],"that":[7,60,128,139,182,212,282],"involves":[8],"the":[9,28,51,62,84,93,130,143,147,151,178,199,213,222,227,233,246,249,255,299],"donation":[10],"of":[11,42,55,57,64,89,111,124,132,146,177,188,194,215,229,232,248,251,257,283,301],"DNA":[12],"or":[13,40,190],"RNA":[14],"from":[15,27,142,150,185,275],"an":[16,38,133],"organism":[17,39],"to":[18,50,69,78,108,173,225,238,266],"second,":[20],"unrelated":[21],"organism.":[22,153,305],"This":[23,169],"different":[26,141,207,243],"more":[29],"common":[30,277],"one,":[31],"vertical":[32],"transference,":[33],"which":[34,184],"present":[36],"whenever":[37],"pair":[41],"organisms":[43],"reproduce":[44],"and":[45,77,114,159,295],"transmit":[46],"their":[47,161],"genetic":[48,58,90,258],"material":[49,59,91],"descendants.":[52],"The":[53,121,154,209,235],"identification":[54],"segments":[56],"are":[61,140,156,245],"result":[63],"horizontal":[65,119,167],"relevant":[68],"construct":[70],"accurate":[71],"phylogenetic":[72],"trees,":[73],"on":[74,83,271],"one":[75,231],"hand,":[76],"detect":[79,109,267],"possible":[80,116],"drug-resistance":[81],"mechanisms,":[82],"other,":[85],"since":[86],"this":[87],"movement":[88],"main":[94],"cause":[95],"behind":[96],"antibiotic":[97],"resistance":[98],"in":[99,183,280],"bacteria.":[100],"Here,":[101],"we":[102],"describe":[103,261],"novel":[105,264,285,294],"algorithm":[106,223],"able":[107],"sequences":[110,138,149,250],"foreign":[112,252],"origin,":[113],"thus,":[115,160],"acquired":[117],"via":[118],"transference.":[120,168],"general":[122],"idea":[123],"our":[125],"method":[126,265],"within":[129,287],"genome":[131,300],"organism,":[134],"there":[135],"might":[136],"be":[137,164,239],"vast":[144],"majority":[145],"remaining":[148],"same":[152,200],"former":[155],"candidate":[157],"anomalies,":[158],"origin":[162,253],"may":[163],"explained":[165],"by":[166,198,241],"approach":[170],"equivalent":[172,247],"particular":[175],"instance":[176],"authorship":[179,228],"attribution":[180],"problem,":[181],"set":[187],"texts":[189,236],"paragraphs,":[191],"almost":[192],"all":[193],"them":[195],"were":[196],"written":[197,240],"author,":[201],"whereas":[202],"minority":[204],"has":[205,224],"authorship.":[208],"constraint":[210],"author":[214,244],"each":[216,230],"text":[217],"not":[219],"known,":[220],"so":[221],"attribute":[226],"texts.":[234],"detected":[237],"for":[254],"case":[256],"material.":[259],"We":[260],"here":[262],"anomalous":[268],"sequences,":[269],"based":[270],"interpretable":[272],"embeddings":[273],"derived":[274],"attention":[278],"mechanism":[279],"humans,":[281],"identifying":[284],"tokens":[286],"given":[289],"sequence.":[290],"Our":[291],"proposal":[292],"achieves":[293],"consistent":[296],"results":[297],"over":[298],"well":[303],"known":[304]},"counts_by_year":[],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
