{"id":"https://openalex.org/W3005794232","doi":"https://doi.org/10.3233/jifs-179650","title":"Optimizing biomedical ontology alignment in lexical vector space","display_name":"Optimizing biomedical ontology alignment in lexical vector space","publication_year":2020,"publication_date":"2020-02-14","ids":{"openalex":"https://openalex.org/W3005794232","doi":"https://doi.org/10.3233/jifs-179650","mag":"3005794232"},"language":"en","primary_location":{"id":"doi:10.3233/jifs-179650","is_oa":false,"landing_page_url":"https://doi.org/10.3233/jifs-179650","pdf_url":null,"source":{"id":"https://openalex.org/S179157397","display_name":"Journal of Intelligent & Fuzzy Systems","issn_l":"1064-1246","issn":["1064-1246","1875-8967"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent &amp; Fuzzy Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053458745","display_name":"Xingsi Xue","orcid":"https://orcid.org/0000-0002-3008-8782"},"institutions":[{"id":"https://openalex.org/I83791580","display_name":"Fujian University of Technology","ror":"https://ror.org/03c8fdb16","country_code":"CN","type":"education","lineage":["https://openalex.org/I83791580"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xingsi Xue","raw_affiliation_strings":["College of Information Science and Engineering, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","Fujian Key Lab for Automotive Electronics and Electric Drive, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","Fujian Provincial Key Laboratory of Big Data Mining and Applications, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","Institute of Artificial Intelligence, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","Intelligent Information Processing Research Center, Fujian University of Technology, Minhou, Fuzhou, Fujian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","institution_ids":["https://openalex.org/I83791580"]},{"raw_affiliation_string":"Fujian Key Lab for Automotive Electronics and Electric Drive, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","institution_ids":["https://openalex.org/I83791580"]},{"raw_affiliation_string":"Fujian Provincial Key Laboratory of Big Data Mining and Applications, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","institution_ids":["https://openalex.org/I83791580"]},{"raw_affiliation_string":"Institute of Artificial Intelligence, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","institution_ids":["https://openalex.org/I83791580"]},{"raw_affiliation_string":"Intelligent Information Processing Research Center, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","institution_ids":["https://openalex.org/I83791580"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101475820","display_name":"Xiaojing Wu","orcid":"https://orcid.org/0000-0003-1178-6160"},"institutions":[{"id":"https://openalex.org/I83791580","display_name":"Fujian University of Technology","ror":"https://ror.org/03c8fdb16","country_code":"CN","type":"education","lineage":["https://openalex.org/I83791580"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaojing Wu","raw_affiliation_strings":["College of Information Science and Engineering, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","Intelligent Information Processing Research Center, Fujian University of Technology, Minhou, Fuzhou, Fujian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","institution_ids":["https://openalex.org/I83791580"]},{"raw_affiliation_string":"Intelligent Information Processing Research Center, Fujian University of Technology, Minhou, Fuzhou, Fujian, China","institution_ids":["https://openalex.org/I83791580"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5053458745"],"corresponding_institution_ids":["https://openalex.org/I83791580"],"apc_list":null,"apc_paid":null,"fwci":0.1667,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.48682768,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"38","issue":"5","first_page":"5609","last_page":"5614"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9854999780654907,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7491434812545776},{"id":"https://openalex.org/keywords/vector-space-model","display_name":"Vector space model","score":0.7056935429573059},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.6996673941612244},{"id":"https://openalex.org/keywords/cosine-similarity","display_name":"Cosine similarity","score":0.6778246164321899},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.654582142829895},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5893706679344177},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.562694251537323},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.5205422639846802},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.520165205001831},{"id":"https://openalex.org/keywords/vector-space","display_name":"Vector space","score":0.5120997428894043},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.47711876034736633},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4673042297363281},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.46090587973594666},{"id":"https://openalex.org/keywords/similarity-measure","display_name":"Similarity measure","score":0.4257892072200775},{"id":"https://openalex.org/keywords/dimension","display_name":"Dimension (graph theory)","score":0.4170507490634918},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3979288339614868},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37183114886283875},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.3264138102531433},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.29737389087677},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.1724366545677185},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1609387993812561},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.13413575291633606},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.06802722811698914}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7491434812545776},{"id":"https://openalex.org/C89686163","wikidata":"https://www.wikidata.org/wiki/Q1187982","display_name":"Vector space model","level":2,"score":0.7056935429573059},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.6996673941612244},{"id":"https://openalex.org/C2780762811","wikidata":"https://www.wikidata.org/wiki/Q1784941","display_name":"Cosine similarity","level":3,"score":0.6778246164321899},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.654582142829895},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5893706679344177},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.562694251537323},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.5205422639846802},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.520165205001831},{"id":"https://openalex.org/C13336665","wikidata":"https://www.wikidata.org/wiki/Q125977","display_name":"Vector space","level":2,"score":0.5120997428894043},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.47711876034736633},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4673042297363281},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.46090587973594666},{"id":"https://openalex.org/C2776517306","wikidata":"https://www.wikidata.org/wiki/Q29017317","display_name":"Similarity measure","level":2,"score":0.4257892072200775},{"id":"https://openalex.org/C33676613","wikidata":"https://www.wikidata.org/wiki/Q13415176","display_name":"Dimension (graph theory)","level":2,"score":0.4170507490634918},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3979288339614868},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37183114886283875},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.3264138102531433},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29737389087677},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.1724366545677185},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1609387993812561},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.13413575291633606},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.06802722811698914},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/jifs-179650","is_oa":false,"landing_page_url":"https://doi.org/10.3233/jifs-179650","pdf_url":null,"source":{"id":"https://openalex.org/S179157397","display_name":"Journal of Intelligent & Fuzzy Systems","issn_l":"1064-1246","issn":["1064-1246","1875-8967"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent &amp; Fuzzy Systems","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W566099750","https://openalex.org/W2008525336","https://openalex.org/W2074107311","https://openalex.org/W2077635310","https://openalex.org/W2081580037","https://openalex.org/W2141595878","https://openalex.org/W2144244034","https://openalex.org/W2147393868","https://openalex.org/W2160005926","https://openalex.org/W2183392014","https://openalex.org/W2249233388","https://openalex.org/W2518055200","https://openalex.org/W2609579687","https://openalex.org/W2758717852","https://openalex.org/W2768403651","https://openalex.org/W2885321581","https://openalex.org/W2890503685","https://openalex.org/W2904326687","https://openalex.org/W2908549093","https://openalex.org/W2910382407","https://openalex.org/W2928261986","https://openalex.org/W2941763426","https://openalex.org/W2952195127","https://openalex.org/W2999802385","https://openalex.org/W3003236177","https://openalex.org/W4252954629","https://openalex.org/W6635246061","https://openalex.org/W6685998488"],"related_works":["https://openalex.org/W3011505626","https://openalex.org/W3128481113","https://openalex.org/W2284045667","https://openalex.org/W960953481","https://openalex.org/W57923944","https://openalex.org/W2464347310","https://openalex.org/W3109760095","https://openalex.org/W2981287881","https://openalex.org/W1598081081","https://openalex.org/W2056226831"],"abstract_inverted_index":{"Biomedical":[0],"ontology":[1,18],"matching":[2],"dedicates":[3],"to":[4,53,67,102,114],"find":[5,115],"two":[6,55,76,98],"heterogeneous":[7],"ontologies\u2019":[8],"alignment":[9],"and":[10,29,62,90,95,129,146],"address":[11],"their":[12,69,88],"heterogeneity":[13],"problem.":[14],"Typically,":[15],"a":[16,35,59,80,109],"biomedical":[17,21,56,77],"has":[19],"various":[20,27],"concepts":[22,57,78],"that":[23],"are":[24],"described":[25],"with":[26,87,133],"labels":[28],"datatype":[30,42],"property":[31,43],"names,":[32],"which":[33,84],"forms":[34],"lexical":[36,81,93],"space":[37,83,135],"where":[38],"each":[39],"label":[40],"or":[41],"represents":[44],"one":[45],"dimension.":[46],"Therefore,":[47],"it":[48],"is":[49,85],"an":[50],"effective":[51],"way":[52],"present":[54,75],"in":[58,79],"vector":[60,82],"space,":[61],"use":[63],"the":[64,116,130,150],"cosine":[65,100],"distance":[66,101],"measure":[68,103],"similarity.":[70],"In":[71],"this":[72],"work,":[73],"we":[74,107],"constructed":[86],"inner":[89],"context":[91],"concepts\u2019":[92],"information,":[94],"then":[96],"utilize":[97],"vector\u2019s":[99],"similarity":[104],"value.":[105],"Then,":[106],"propose":[108],"compact":[110],"Evolutionary":[111],"Algorithm":[112,141],"(cEA)":[113],"concept":[117],"correspondences.":[118],"The":[119],"experiment":[120],"uses":[121],"Ontology":[122,137,143],"Alignment":[123],"Evaluation":[124],"Initiative":[125],"(OAEI)\u2019s":[126],"testing":[127],"cases,":[128],"expeirmental":[131],"results":[132],"Vector":[134],"Based":[136],"Matcher":[138,144],"(VBOM),":[139],"Genetic":[140],"based":[142],"(GAOM)":[145],"OAEI\u2019s":[147],"participants":[148],"show":[149],"effectiveness":[151],"of":[152],"our":[153],"proposal.":[154]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
