{"id":"https://openalex.org/W2772657239","doi":"https://doi.org/10.3233/jifs-17026","title":"Identification of overlapping protein complexes by fuzzy K-medoids clustering algorithm in yeast protein-protein interaction networks","display_name":"Identification of overlapping protein complexes by fuzzy K-medoids clustering algorithm in yeast protein-protein interaction networks","publication_year":2017,"publication_date":"2017-12-07","ids":{"openalex":"https://openalex.org/W2772657239","doi":"https://doi.org/10.3233/jifs-17026","mag":"2772657239"},"language":"en","primary_location":{"id":"doi:10.3233/jifs-17026","is_oa":false,"landing_page_url":"https://doi.org/10.3233/jifs-17026","pdf_url":null,"source":{"id":"https://openalex.org/S179157397","display_name":"Journal of Intelligent & Fuzzy Systems","issn_l":"1064-1246","issn":["1064-1246","1875-8967"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent &amp; Fuzzy Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017282597","display_name":"Buwen Cao","orcid":"https://orcid.org/0000-0002-9372-1135"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I39521962","display_name":"Hunan City University","ror":"https://ror.org/01vd7vb53","country_code":"CN","type":"education","lineage":["https://openalex.org/I39521962"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Buwen Cao","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","School of Information Science and Engineering, Hunan City University, Yiyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"School of Information Science and Engineering, Hunan City University, Yiyang, China","institution_ids":["https://openalex.org/I39521962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045152496","display_name":"Shuguang Deng","orcid":"https://orcid.org/0000-0003-2892-3504"},"institutions":[{"id":"https://openalex.org/I39521962","display_name":"Hunan City University","ror":"https://ror.org/01vd7vb53","country_code":"CN","type":"education","lineage":["https://openalex.org/I39521962"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuguang Deng","raw_affiliation_strings":["College of Communication and Electronic Engineering, Hunan City University, Yiyang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Communication and Electronic Engineering, Hunan City University, Yiyang, China","institution_ids":["https://openalex.org/I39521962"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026469278","display_name":"Jiawei Luo","orcid":"https://orcid.org/0000-0003-2385-8272"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiawei Luo","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019845646","display_name":"Pingjian Ding","orcid":"https://orcid.org/0000-0002-2613-2496"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pingjian Ding","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101485863","display_name":"Shulin Wang","orcid":"https://orcid.org/0000-0003-1474-6455"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shulin Wang","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5017282597"],"corresponding_institution_ids":["https://openalex.org/I16609230","https://openalex.org/I39521962"],"apc_list":null,"apc_paid":null,"fwci":0.2243,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.57738121,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"34","issue":"1","first_page":"93","last_page":"103"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9758999943733215,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/medoid","display_name":"Medoid","score":0.7157663702964783},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6275655031204224},{"id":"https://openalex.org/keywords/fuzzy-logic","display_name":"Fuzzy logic","score":0.5756133794784546},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5721838474273682},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5622889399528503},{"id":"https://openalex.org/keywords/k-medoids","display_name":"k-medoids","score":0.5266304612159729},{"id":"https://openalex.org/keywords/fuzzy-clustering","display_name":"Fuzzy clustering","score":0.4429701566696167},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40238499641418457},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3638554811477661},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.26365214586257935},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19833755493164062},{"id":"https://openalex.org/keywords/cure-data-clustering-algorithm","display_name":"CURE data clustering algorithm","score":0.12583103775978088}],"concepts":[{"id":"https://openalex.org/C63085389","wikidata":"https://www.wikidata.org/wiki/Q4287912","display_name":"Medoid","level":3,"score":0.7157663702964783},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6275655031204224},{"id":"https://openalex.org/C58166","wikidata":"https://www.wikidata.org/wiki/Q224821","display_name":"Fuzzy logic","level":2,"score":0.5756133794784546},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5721838474273682},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5622889399528503},{"id":"https://openalex.org/C65932786","wikidata":"https://www.wikidata.org/wiki/Q3191282","display_name":"k-medoids","level":5,"score":0.5266304612159729},{"id":"https://openalex.org/C17212007","wikidata":"https://www.wikidata.org/wiki/Q5511111","display_name":"Fuzzy clustering","level":3,"score":0.4429701566696167},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40238499641418457},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3638554811477661},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.26365214586257935},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19833755493164062},{"id":"https://openalex.org/C33704608","wikidata":"https://www.wikidata.org/wiki/Q5014717","display_name":"CURE data clustering algorithm","level":4,"score":0.12583103775978088},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/jifs-17026","is_oa":false,"landing_page_url":"https://doi.org/10.3233/jifs-17026","pdf_url":null,"source":{"id":"https://openalex.org/S179157397","display_name":"Journal of Intelligent & Fuzzy Systems","issn_l":"1064-1246","issn":["1064-1246","1875-8967"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent &amp; Fuzzy Systems","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W796286943","https://openalex.org/W1485582261","https://openalex.org/W1876024155","https://openalex.org/W1970301364","https://openalex.org/W1985817649","https://openalex.org/W1988496202","https://openalex.org/W2030928641","https://openalex.org/W2034328794","https://openalex.org/W2050721857","https://openalex.org/W2057793636","https://openalex.org/W2082565035","https://openalex.org/W2085658677","https://openalex.org/W2096768134","https://openalex.org/W2107710781","https://openalex.org/W2110708857","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2117720828","https://openalex.org/W2124166542","https://openalex.org/W2124354935","https://openalex.org/W2124954925","https://openalex.org/W2134019300","https://openalex.org/W2136850043","https://openalex.org/W2138003801","https://openalex.org/W2140280811","https://openalex.org/W2140462113","https://openalex.org/W2144393227","https://openalex.org/W2152144380","https://openalex.org/W2152486860","https://openalex.org/W2165533101","https://openalex.org/W2242893737","https://openalex.org/W2299896090","https://openalex.org/W2323587325","https://openalex.org/W2557019241","https://openalex.org/W4234482552"],"related_works":["https://openalex.org/W2802044484","https://openalex.org/W2088480663","https://openalex.org/W2389995834","https://openalex.org/W2391918992","https://openalex.org/W2165254090","https://openalex.org/W2154998236","https://openalex.org/W2799087180","https://openalex.org/W2038451207","https://openalex.org/W2367316505","https://openalex.org/W2586427049"],"abstract_inverted_index":{"The":[0,103],"identification":[1],"of":[2,36,157,222],"overlapping":[3,87],"protein":[4,23,46,57,63,88,101,117,136,147,167,175,192],"complexes":[5,64,89,153,168,193],"in":[6,70,127,220],"proteinprotein":[7],"interaction":[8],"(PPI)":[9],"networks":[10,93,184],"may":[11],"elucidate":[12],"cellular":[13,19],"functional":[14],"organizations":[15],"and":[16,119,137,185,213,215,225],"their":[17],"underlying":[18],"mechanisms.":[20],"Recently,":[21],"many":[22],"complex":[24,140],"mining":[25,42],"algorithms":[26,38],"have":[27],"been":[28],"developed":[29],"for":[30,61],"PPI":[31,92,129,183],"networks.":[32],"However,":[33],"the":[34,52,66,96,110,115,125,128,132,146,155,164,173,179,187],"majority":[35],"available":[37],"primarily":[39,107],"depend":[40],"on":[41,95,109],"dense":[43],"subgraphs":[44],"as":[45,208],"complexes,":[47],"thereby":[48],"failing":[49],"to":[50,73,143,149,160,171,181],"consider":[51],"inherent":[53],"biological":[54,67],"meanings":[55],"between":[56,100,134],"pairs.":[58,102],"Thus,":[59],"methods":[60],"identifying":[62],"using":[65,189],"significance":[68],"hidden":[69],"edges":[71],"need":[72],"be":[74],"investigated.":[75],"In":[76,163],"this":[77],"paper,":[78],"we":[79],"propose":[80],"IK-medoids,":[81],"an":[82],"improved":[83],"method":[84,180,203],"that":[85,113,201],"detects":[86],"from":[90,124,195],"weighted":[91],"based":[94,108],"rough":[97],"fuzzy":[98,111],"relationships":[99],"presented":[104],"algorithm":[105],"is":[106,122,141],"relationship":[112],"obtains":[114],"non-overlapping":[116],"substructure,":[118],"then":[120],"K-medoids":[121],"executed":[123],"proteins":[126],"network.":[130],"Next,":[131],"similarity":[133,159],"one":[135,150],"each":[138,158],"candidate":[139],"calculated":[142],"determine":[144],"whether":[145],"belongs":[148],"or":[151],"multiple":[152],"with":[154],"ration":[156],"maximum":[161],"similarity.":[162],"end,":[165],"overlapped":[166],"are":[169],"merged":[170],"form":[172],"final":[174],"complexes.":[176],"We":[177],"apply":[178],"three":[182],"validate":[186],"results":[188,199],"two":[190],"reference":[191],"retrieved":[194],"public":[196],"databases.":[197],"Experimental":[198],"show":[200],"our":[202],"outperforms":[204],"classical":[205],"algorithms,":[206],"such":[207],"ClusterONE,":[209],"CMC,":[210],"MCL,":[211],"OSLOM,":[212],"RFC,":[214],"achieves":[216],"ideal":[217],"overall":[218],"performance":[219],"terms":[221],"F-measure,":[223],"sensitivity,":[224],"accuracy.":[226]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
