{"id":"https://openalex.org/W4214652235","doi":"https://doi.org/10.3233/jcm-225952","title":"A review of biomedical named entity recognition","display_name":"A review of biomedical named entity recognition","publication_year":2022,"publication_date":"2022-03-01","ids":{"openalex":"https://openalex.org/W4214652235","doi":"https://doi.org/10.3233/jcm-225952"},"language":"en","primary_location":{"id":"doi:10.3233/jcm-225952","is_oa":false,"landing_page_url":"https://doi.org/10.3233/jcm-225952","pdf_url":null,"source":{"id":"https://openalex.org/S2765058733","display_name":"Journal of Computational Methods in Sciences and Engineering","issn_l":"1472-7978","issn":["1472-7978","1875-8983"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Methods in Sciences and Engineering","raw_type":"journal-article"},"type":"review","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104032403","display_name":"Lu Chang","orcid":null},"institutions":[{"id":"https://openalex.org/I120379545","display_name":"Inner Mongolia Agricultural University","ror":"https://ror.org/015d0jq83","country_code":"CN","type":"education","lineage":["https://openalex.org/I120379545"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lu Chang","raw_affiliation_strings":["College of Computer and Information Engineering, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China","institution_ids":["https://openalex.org/I120379545"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067296297","display_name":"Ruihuan Zhang","orcid":"https://orcid.org/0000-0003-4486-2916"},"institutions":[{"id":"https://openalex.org/I120379545","display_name":"Inner Mongolia Agricultural University","ror":"https://ror.org/015d0jq83","country_code":"CN","type":"education","lineage":["https://openalex.org/I120379545"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruihuan Zhang","raw_affiliation_strings":["College of Computer and Information Engineering, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China","institution_ids":["https://openalex.org/I120379545"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111972683","display_name":"Jia Lv","orcid":"https://orcid.org/0000-0001-6810-5368"},"institutions":[{"id":"https://openalex.org/I120379545","display_name":"Inner Mongolia Agricultural University","ror":"https://ror.org/015d0jq83","country_code":"CN","type":"education","lineage":["https://openalex.org/I120379545"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jia Lv","raw_affiliation_strings":["College of Computer and Information Engineering, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China","institution_ids":["https://openalex.org/I120379545"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108314054","display_name":"Weiguang Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I120379545","display_name":"Inner Mongolia Agricultural University","ror":"https://ror.org/015d0jq83","country_code":"CN","type":"education","lineage":["https://openalex.org/I120379545"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weiguang Zhou","raw_affiliation_strings":["Veterinary College, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Veterinary College, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China","institution_ids":["https://openalex.org/I120379545"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053700975","display_name":"Yunli Bai","orcid":"https://orcid.org/0000-0003-1171-3746"},"institutions":[{"id":"https://openalex.org/I120379545","display_name":"Inner Mongolia Agricultural University","ror":"https://ror.org/015d0jq83","country_code":"CN","type":"education","lineage":["https://openalex.org/I120379545"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yunli Bai","raw_affiliation_strings":["College of Computer and Information Engineering, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China","institution_ids":["https://openalex.org/I120379545"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5053700975"],"corresponding_institution_ids":["https://openalex.org/I120379545"],"apc_list":null,"apc_paid":null,"fwci":0.2599,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.50432925,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"22","issue":"3","first_page":"893","last_page":"900"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9765999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9696000218391418,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7837863564491272},{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.7249554991722107},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.6033769249916077},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.5722578167915344},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5653062462806702},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5146837830543518},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.45144200325012207},{"id":"https://openalex.org/keywords/machine-translation","display_name":"Machine translation","score":0.44228172302246094},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4389338493347168},{"id":"https://openalex.org/keywords/named-entity","display_name":"Named entity","score":0.4385320544242859},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4361613690853119},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.42295122146606445},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1096189022064209},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07215940952301025}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7837863564491272},{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.7249554991722107},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.6033769249916077},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.5722578167915344},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5653062462806702},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5146837830543518},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.45144200325012207},{"id":"https://openalex.org/C203005215","wikidata":"https://www.wikidata.org/wiki/Q79798","display_name":"Machine translation","level":2,"score":0.44228172302246094},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4389338493347168},{"id":"https://openalex.org/C2777889803","wikidata":"https://www.wikidata.org/wiki/Q25047676","display_name":"Named entity","level":2,"score":0.4385320544242859},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4361613690853119},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.42295122146606445},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1096189022064209},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07215940952301025},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/jcm-225952","is_oa":false,"landing_page_url":"https://doi.org/10.3233/jcm-225952","pdf_url":null,"source":{"id":"https://openalex.org/S2765058733","display_name":"Journal of Computational Methods in Sciences and Engineering","issn_l":"1472-7978","issn":["1472-7978","1875-8983"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Methods in Sciences and Engineering","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1991983805","https://openalex.org/W2095444228","https://openalex.org/W2115251736","https://openalex.org/W2160022416","https://openalex.org/W2169491861","https://openalex.org/W2293800304","https://openalex.org/W2376806502","https://openalex.org/W2769387903","https://openalex.org/W2779457220","https://openalex.org/W2800535933","https://openalex.org/W2802750846","https://openalex.org/W2911489562","https://openalex.org/W2963339489","https://openalex.org/W3107083523","https://openalex.org/W3159860728","https://openalex.org/W4389716622","https://openalex.org/W4405564074","https://openalex.org/W6674523784","https://openalex.org/W6677480792","https://openalex.org/W6758293299"],"related_works":["https://openalex.org/W2167202928","https://openalex.org/W2032007337","https://openalex.org/W2186562580","https://openalex.org/W2155874911","https://openalex.org/W1884363728","https://openalex.org/W4386977977","https://openalex.org/W2916255597","https://openalex.org/W4253099099","https://openalex.org/W3202659824","https://openalex.org/W173870552"],"abstract_inverted_index":{"Biomedical":[0],"research":[1,26],"on":[2,128],"brucellosis":[3,29],"has":[4,33],"been":[5,34,43],"a":[6,35,152],"hot":[7],"topic":[8],"of":[9,17,28,48,55,97,125],"discussion":[10],"around":[11],"the":[12,15,18,24,56,93,123,135,142,155],"world.":[13],"In":[14,90],"face":[16],"complex":[19],"literature,":[20],"how":[21],"to":[22,150],"obtain":[23],"relevant":[25],"knowledge":[27],"by":[30],"biomedical":[31,49],"experts":[32],"problem":[36],"that":[37],"researchers":[38],"in":[39,85],"this":[40,91,138],"field":[41],"have":[42],"working":[44],"on.":[45],"Firstly,":[46],"identification":[47],"named":[50,98],"entities":[51],"is":[52,61,109],"one":[53],"part":[54],"work.":[57],"Named":[58],"entity":[59,99],"recognition":[60,100],"an":[62,82],"important":[63,83],"basic":[64],"tool":[65],"for":[66,154],"information":[67],"extraction,":[68],"question":[69],"answering":[70],"system,":[71],"syntactic":[72],"analysis,":[73],"machine":[74],"translation":[75],"and":[76,80,95,107,118,122,147],"other":[77,119],"application":[78],"fields,":[79],"plays":[81],"role":[84],"natural":[86],"language":[87],"processing":[88],"technology.":[89],"paper,":[92],"definition":[94],"methods":[96,127,149],"are":[101,132],"discussed.":[102],"Literature":[103],"published":[104],"between":[105],"2012":[106],"2020":[108],"reviewed":[110],"from":[111],"China":[112],"National":[113],"Knowledge":[114],"Infrastructure":[115],"(CNKI),":[116],"PubMed":[117],"retrieval":[120],"sources,":[121],"results":[124],"different":[126,129],"data":[130,145],"sets":[131,146],"summarized.":[133],"At":[134],"same":[136],"time,":[137],"paper":[139],"also":[140],"introduces":[141],"biomedicine":[143],"related":[144],"evaluation":[148],"lay":[151],"foundation":[153],"follow-up":[156],"research.":[157]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
