{"id":"https://openalex.org/W4206435569","doi":"https://doi.org/10.3233/isb-210238","title":"Network analysis of host-pathogen protein interactions in microbe induced cardiovascular diseases","display_name":"Network analysis of host-pathogen protein interactions in microbe induced cardiovascular diseases","publication_year":2022,"publication_date":"2022-01-04","ids":{"openalex":"https://openalex.org/W4206435569","doi":"https://doi.org/10.3233/isb-210238","pmid":"https://pubmed.ncbi.nlm.nih.gov/35001887"},"language":"en","primary_location":{"id":"doi:10.3233/isb-210238","is_oa":true,"landing_page_url":"https://doi.org/10.3233/isb-210238","pdf_url":"https://content.iospress.com:443/download/in-silico-biology/isb210238?id=in-silico-biology%2Fisb210238","source":{"id":"https://openalex.org/S120694666","display_name":"In Silico Biology","issn_l":"1386-6338","issn":["1386-6338","1434-3207"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"In Silico Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://content.iospress.com:443/download/in-silico-biology/isb210238?id=in-silico-biology%2Fisb210238","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103228237","display_name":"N. L. Singh","orcid":"https://orcid.org/0000-0001-7153-0891"},"institutions":[{"id":"https://openalex.org/I3141573830","display_name":"Department of Biotechnology","ror":"https://ror.org/03tjsyq23","country_code":"IN","type":"government","lineage":["https://openalex.org/I2799351866","https://openalex.org/I3141573830","https://openalex.org/I4210134808"]},{"id":"https://openalex.org/I36090812","display_name":"Netaji Subhas University of Technology","ror":"https://ror.org/01fczmh85","country_code":"IN","type":"education","lineage":["https://openalex.org/I36090812"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Nirupma Singh","raw_affiliation_strings":["Computational and Structural Biology Laboratory, Department of Biotechnology, Netaji Subhas Institute of Technology, Dwarka, New Delhi, India"],"affiliations":[{"raw_affiliation_string":"Computational and Structural Biology Laboratory, Department of Biotechnology, Netaji Subhas Institute of Technology, Dwarka, New Delhi, India","institution_ids":["https://openalex.org/I36090812","https://openalex.org/I3141573830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102824033","display_name":"Sneha Rai","orcid":"https://orcid.org/0000-0002-6094-5896"},"institutions":[{"id":"https://openalex.org/I3141573830","display_name":"Department of Biotechnology","ror":"https://ror.org/03tjsyq23","country_code":"IN","type":"government","lineage":["https://openalex.org/I2799351866","https://openalex.org/I3141573830","https://openalex.org/I4210134808"]},{"id":"https://openalex.org/I36090812","display_name":"Netaji Subhas University of Technology","ror":"https://ror.org/01fczmh85","country_code":"IN","type":"education","lineage":["https://openalex.org/I36090812"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sneha Rai","raw_affiliation_strings":["Computational and Structural Biology Laboratory, Department of Biotechnology, Netaji Subhas Institute of Technology, Dwarka, New Delhi, India"],"affiliations":[{"raw_affiliation_string":"Computational and Structural Biology Laboratory, Department of Biotechnology, Netaji Subhas Institute of Technology, Dwarka, New Delhi, India","institution_ids":["https://openalex.org/I36090812","https://openalex.org/I3141573830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015254541","display_name":"Rakesh Bhatnagar","orcid":"https://orcid.org/0000-0001-7184-6378"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Rakesh Bhatnagar","raw_affiliation_strings":["Amity University, Jaipur, Rajasthan, India"],"affiliations":[{"raw_affiliation_string":"Amity University, Jaipur, Rajasthan, India","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054578303","display_name":"Sonika Bhatnagar","orcid":"https://orcid.org/0000-0002-8818-4240"},"institutions":[{"id":"https://openalex.org/I3141573830","display_name":"Department of Biotechnology","ror":"https://ror.org/03tjsyq23","country_code":"IN","type":"government","lineage":["https://openalex.org/I2799351866","https://openalex.org/I3141573830","https://openalex.org/I4210134808"]},{"id":"https://openalex.org/I36090812","display_name":"Netaji Subhas University of Technology","ror":"https://ror.org/01fczmh85","country_code":"IN","type":"education","lineage":["https://openalex.org/I36090812"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Sonika Bhatnagar","raw_affiliation_strings":["Computational and Structural Biology Laboratory, Department of Biological Sciences and Engineering, Netaji Subhas University of Technology, Dwarka, New Delhi, India","Computational and Structural Biology Laboratory, Department of Biotechnology, Netaji Subhas Institute of Technology, Dwarka, New Delhi, India"],"affiliations":[{"raw_affiliation_string":"Computational and Structural Biology Laboratory, Department of Biological Sciences and Engineering, Netaji Subhas University of Technology, Dwarka, New Delhi, India","institution_ids":["https://openalex.org/I36090812"]},{"raw_affiliation_string":"Computational and Structural Biology Laboratory, Department of Biotechnology, Netaji Subhas Institute of Technology, Dwarka, New Delhi, India","institution_ids":["https://openalex.org/I36090812","https://openalex.org/I3141573830"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5015254541","https://openalex.org/A5054578303"],"corresponding_institution_ids":["https://openalex.org/I3141573830","https://openalex.org/I36090812"],"apc_list":null,"apc_paid":null,"fwci":0.2604,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.50202319,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"14","issue":"3-4","first_page":"115","last_page":"133"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9811000227928162,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9811000227928162,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12232","display_name":"Yersinia bacterium, plague, ectoparasites research","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10166","display_name":"Mosquito-borne diseases and control","score":0.9404000043869019,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6316690444946289},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4638168215751648},{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.4526429772377014},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.41941964626312256},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.355945885181427},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3125847280025482},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20326760411262512},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19583383202552795}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6316690444946289},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4638168215751648},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.4526429772377014},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.41941964626312256},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.355945885181427},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3125847280025482},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20326760411262512},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19583383202552795}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3233/isb-210238","is_oa":true,"landing_page_url":"https://doi.org/10.3233/isb-210238","pdf_url":"https://content.iospress.com:443/download/in-silico-biology/isb210238?id=in-silico-biology%2Fisb210238","source":{"id":"https://openalex.org/S120694666","display_name":"In Silico Biology","issn_l":"1386-6338","issn":["1386-6338","1434-3207"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"In Silico Biology","raw_type":"journal-article"},{"id":"pmid:35001887","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35001887","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"In silico biology","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8842779","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8842779","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"In Silico Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3233/isb-210238","is_oa":true,"landing_page_url":"https://doi.org/10.3233/isb-210238","pdf_url":"https://content.iospress.com:443/download/in-silico-biology/isb210238?id=in-silico-biology%2Fisb210238","source":{"id":"https://openalex.org/S120694666","display_name":"In Silico Biology","issn_l":"1386-6338","issn":["1386-6338","1434-3207"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"In Silico Biology","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5400000214576721}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4206435569.pdf","grobid_xml":"https://content.openalex.org/works/W4206435569.grobid-xml"},"referenced_works_count":103,"referenced_works":["https://openalex.org/W59031459","https://openalex.org/W1797058518","https://openalex.org/W1837456407","https://openalex.org/W1981243854","https://openalex.org/W1995683190","https://openalex.org/W2015256176","https://openalex.org/W2024060441","https://openalex.org/W2024648909","https://openalex.org/W2027847170","https://openalex.org/W2028133290","https://openalex.org/W2035252561","https://openalex.org/W2037442572","https://openalex.org/W2037502650","https://openalex.org/W2038195874","https://openalex.org/W2038829792","https://openalex.org/W2045289485","https://openalex.org/W2050401089","https://openalex.org/W2052685738","https://openalex.org/W2061786865","https://openalex.org/W2062685052","https://openalex.org/W2064627557","https://openalex.org/W2070575931","https://openalex.org/W2070722739","https://openalex.org/W2074443723","https://openalex.org/W2084608741","https://openalex.org/W2090709734","https://openalex.org/W2090845578","https://openalex.org/W2093076255","https://openalex.org/W2094757405","https://openalex.org/W2099877544","https://openalex.org/W2100665873","https://openalex.org/W2102162073","https://openalex.org/W2102268440","https://openalex.org/W2104791137","https://openalex.org/W2113140044","https://openalex.org/W2118258530","https://openalex.org/W2124249167","https://openalex.org/W2124637492","https://openalex.org/W2129202792","https://openalex.org/W2131457857","https://openalex.org/W2133177319","https://openalex.org/W2135197754","https://openalex.org/W2144211111","https://openalex.org/W2147874847","https://openalex.org/W2154139219","https://openalex.org/W2155320925","https://openalex.org/W2155723007","https://openalex.org/W2156345326","https://openalex.org/W2159675211","https://openalex.org/W2163480486","https://openalex.org/W2163485494","https://openalex.org/W2164143190","https://openalex.org/W2179438025","https://openalex.org/W2258283583","https://openalex.org/W2277686653","https://openalex.org/W2308145610","https://openalex.org/W2322763599","https://openalex.org/W2411173195","https://openalex.org/W2418694942","https://openalex.org/W2418699599","https://openalex.org/W2465613542","https://openalex.org/W2508566482","https://openalex.org/W2554322733","https://openalex.org/W2572831998","https://openalex.org/W2575892171","https://openalex.org/W2578175893","https://openalex.org/W2589806888","https://openalex.org/W2614884487","https://openalex.org/W2619198830","https://openalex.org/W2623807333","https://openalex.org/W2738341642","https://openalex.org/W2749147866","https://openalex.org/W2767490506","https://openalex.org/W2782226838","https://openalex.org/W2784929572","https://openalex.org/W2795998890","https://openalex.org/W2806512480","https://openalex.org/W2890019747","https://openalex.org/W2899901902","https://openalex.org/W2900569176","https://openalex.org/W2903139083","https://openalex.org/W2911940576","https://openalex.org/W2921356981","https://openalex.org/W2925169498","https://openalex.org/W2949281991","https://openalex.org/W2949942139","https://openalex.org/W2952926332","https://openalex.org/W2973580411","https://openalex.org/W2993672798","https://openalex.org/W3037058363","https://openalex.org/W3043773740","https://openalex.org/W3044418844","https://openalex.org/W3085022707","https://openalex.org/W3092607310","https://openalex.org/W3138354825","https://openalex.org/W3153050719","https://openalex.org/W3207732274","https://openalex.org/W3213044562","https://openalex.org/W6715059548","https://openalex.org/W6719507027","https://openalex.org/W6734296513","https://openalex.org/W6739281079","https://openalex.org/W6803968179"],"related_works":["https://openalex.org/W2099982459","https://openalex.org/W1982038138","https://openalex.org/W2109298101","https://openalex.org/W2007507741","https://openalex.org/W2159860826","https://openalex.org/W2133294187","https://openalex.org/W4390876228","https://openalex.org/W3192210502","https://openalex.org/W1998222399","https://openalex.org/W4381715389"],"abstract_inverted_index":{"Large-scale":[0],"visualization":[1],"and":[2,46,54,74,85,94,121,136,155,168],"analysis":[3,56],"of":[4,17,21,29,41,63,108,119,180,192],"HPIs":[5,24,30,62],"involved":[6],"in":[7,44,81,113,178,195],"microbial":[8],"CVDs":[9,45],"can":[10,31],"provide":[11],"crucial":[12],"insights":[13],"into":[14],"the":[15,26,33,82,86,141,161],"mechanisms":[16],"pathogenicity.":[18],"The":[19,91,101],"comparison":[20,114],"CVD":[22,87,164],"associated":[23],"with":[25,110,115,126],"entire":[27],"set":[28],"identify":[32],"pathways":[34],"specific":[35,88,145,165],"to":[36,146],"CVDs.":[37,147,198],"Therefore,":[38],"topological":[39],"properties":[40],"HPI":[42],"networks":[43],"all":[47],"pathogens":[48],"was":[49],"studied":[50],"using":[51,59],"Cytoscape3.5.1.":[52],"Ontology":[53],"pathway":[55],"were":[57,79,98,140,159,170],"done":[58],"KOBAS":[60],"3.0.":[61],"Papilloma,":[64],"Herpes,":[65],"Influenza":[66],"A":[67],"virus":[68],"as":[69,71],"well":[70],"Yersinia":[72],"pestis":[73],"Bacillus":[75],"anthracis":[76],"among":[77,160],"bacteria":[78],"predominant":[80],"whole":[83],"(wHPI)":[84],"(cHPI)":[89],"network.":[90],"central":[92,102,120,127],"viral":[93,103,128],"secretory":[95],"bacterial":[96],"proteins":[97,104,112,124,139,144],"predicted":[99],"virulent.":[100],"had":[105],"higher":[106],"number":[107],"interactions":[109],"host":[111,123,172],"bacteria.":[116],"Major":[117],"fraction":[118],"essential":[122],"interacts":[125],"proteins.":[129],"Alpha-synuclein,":[130],"Ubiquitin":[131],"ribosomal":[132],"proteins,":[133],"TATA-box-binding":[134],"protein,":[135],"Polyubiquitin-C":[137],"&B":[138],"top":[142,162],"interacting":[143],"Signaling":[148],"by":[149,183],"NGF,":[150],"Fc":[151],"epsilon":[152],"receptor,":[153],"EGFR":[154],"ubiquitin":[156],"mediated":[157],"proteolysis":[158],"enriched":[163,171],"pathways.":[166],"DEXDc":[167],"HELICc":[169],"mimicry":[173],"domains":[174],"that":[175],"may":[176],"help":[177],"hijacking":[179],"cellular":[181],"machinery":[182],"pathogens.":[184],"This":[185],"study":[186],"provides":[187],"a":[188],"system":[189],"level":[190],"understanding":[191],"cardiac":[193],"damage":[194],"microbe":[196],"induced":[197]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
