{"id":"https://openalex.org/W4226163113","doi":"https://doi.org/10.3233/isb-210226","title":"Reverse engineering of a mechanistic model of gene expression using metastability and temporal dynamics","display_name":"Reverse engineering of a mechanistic model of gene expression using metastability and temporal dynamics","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W4226163113","doi":"https://doi.org/10.3233/isb-210226","pmid":"https://pubmed.ncbi.nlm.nih.gov/34897081"},"language":"en","primary_location":{"id":"doi:10.3233/isb-210226","is_oa":true,"landing_page_url":"https://doi.org/10.3233/isb-210226","pdf_url":"https://content.iospress.com:443/download/in-silico-biology/isb210226?id=in-silico-biology%2Fisb210226","source":{"id":"https://openalex.org/S120694666","display_name":"In Silico Biology","issn_l":"1386-6338","issn":["1386-6338","1434-3207"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"In Silico Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://content.iospress.com:443/download/in-silico-biology/isb210226?id=in-silico-biology%2Fisb210226","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037722506","display_name":"Elias Ventre","orcid":"https://orcid.org/0000-0002-3863-2199"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210101348","display_name":"Centre Inria de l'Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/00n8d6z93","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]},{"id":"https://openalex.org/I4210104796","display_name":"Institut Camille Jordan","ror":"https://ror.org/01ekw7f87","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210104796","https://openalex.org/I4405259976","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I4210108794","display_name":"Climate Modelling Laboratory","ror":"https://ror.org/01ge8wp14","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210108794"]},{"id":"https://openalex.org/I899635006","display_name":"Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/02rx3b187","country_code":"FR","type":"education","lineage":["https://openalex.org/I899635006"]}],"countries":["AU","FR"],"is_corresponding":true,"raw_author_name":"Elias Ventre","raw_affiliation_strings":["Inria Center Grenoble Rhone-Alpes","Laboratory of Biology and Modelling of the Cell","Universit\u00e9 Claude Bernard Lyon 1","Laboratory of Biology and Modelling of the Cell, ENS de Lyon, CNRS UMR 5239, Lyon, France","Inria Center Grenoble Rhone-Alpes, Equipe Dracula, Villeurbanne, France","Institut Camille Jordan, Universit\u00e9 Claude Bernard Lyon 1, CNRS UMR 5208, Villeurbanne, France","Multi-scale modelling of cell dynamics : application to hematopoiesis"],"affiliations":[{"raw_affiliation_string":"Inria Center Grenoble Rhone-Alpes","institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I4210101348"]},{"raw_affiliation_string":"Laboratory of Biology and Modelling of the Cell","institution_ids":["https://openalex.org/I4210108794"]},{"raw_affiliation_string":"Universit\u00e9 Claude Bernard Lyon 1","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"Laboratory of Biology and Modelling of the Cell, ENS de Lyon, CNRS UMR 5239, Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Inria Center Grenoble Rhone-Alpes, Equipe Dracula, Villeurbanne, France","institution_ids":["https://openalex.org/I4210101348","https://openalex.org/I899635006"]},{"raw_affiliation_string":"Institut Camille Jordan, Universit\u00e9 Claude Bernard Lyon 1, CNRS UMR 5208, Villeurbanne, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I4210104796","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Multi-scale modelling of cell dynamics : application to hematopoiesis","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5037722506"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210101348","https://openalex.org/I4210104796","https://openalex.org/I4210108794","https://openalex.org/I899635006"],"apc_list":null,"apc_paid":null,"fwci":0.732,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.70057405,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"14","issue":"3-4","first_page":"89","last_page":"113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9825999736785889,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7040876150131226},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.612898588180542},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6046770811080933},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.49273422360420227},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.43790799379348755},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4252150058746338},{"id":"https://openalex.org/keywords/gaussian-process","display_name":"Gaussian process","score":0.424225389957428},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36863917112350464},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3522668480873108},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32848528027534485},{"id":"https://openalex.org/keywords/gaussian","display_name":"Gaussian","score":0.294350266456604},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24622663855552673},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1841534972190857},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.18278035521507263},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09899038076400757},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.0957287847995758}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7040876150131226},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.612898588180542},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6046770811080933},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.49273422360420227},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.43790799379348755},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4252150058746338},{"id":"https://openalex.org/C61326573","wikidata":"https://www.wikidata.org/wiki/Q1496376","display_name":"Gaussian process","level":3,"score":0.424225389957428},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36863917112350464},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3522668480873108},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32848528027534485},{"id":"https://openalex.org/C163716315","wikidata":"https://www.wikidata.org/wiki/Q901177","display_name":"Gaussian","level":2,"score":0.294350266456604},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24622663855552673},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1841534972190857},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.18278035521507263},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09899038076400757},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0957287847995758},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3233/isb-210226","is_oa":true,"landing_page_url":"https://doi.org/10.3233/isb-210226","pdf_url":"https://content.iospress.com:443/download/in-silico-biology/isb210226?id=in-silico-biology%2Fisb210226","source":{"id":"https://openalex.org/S120694666","display_name":"In Silico Biology","issn_l":"1386-6338","issn":["1386-6338","1434-3207"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"In Silico Biology","raw_type":"journal-article"},{"id":"pmid:34897081","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34897081","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"In silico biology","raw_type":null},{"id":"pmh:oai:HAL:hal-03531749v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03531749","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"In Silico Biology, 2022, 14 (3-4), pp.89-113. &#x27E8;10.3233/ISB-210226&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:8842760","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8842760","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"In Silico Biol","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.3233/isb-210226","is_oa":true,"landing_page_url":"https://doi.org/10.3233/isb-210226","pdf_url":"https://content.iospress.com:443/download/in-silico-biology/isb210226?id=in-silico-biology%2Fisb210226","source":{"id":"https://openalex.org/S120694666","display_name":"In Silico Biology","issn_l":"1386-6338","issn":["1386-6338","1434-3207"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"In Silico Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1092084723","display_name":null,"funder_award_id":"ANR-11-LABX-004","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G2815963884","display_name":null,"funder_award_id":"11-LABX-004","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G32668200","display_name":null,"funder_award_id":"ANR-18-CE45-0023","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3785575267","display_name":null,"funder_award_id":"ANR-11-LABX-0048","funder_id":"https://openalex.org/F4320330080","funder_display_name":"Laboratoire d'Excellence Ecofect"},{"id":"https://openalex.org/G3807293409","display_name":null,"funder_award_id":"ANR-11-LABX-00","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G4717252311","display_name":null,"funder_award_id":"ANR-11-LABX-0048","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5649854608","display_name":null,"funder_award_id":"ANR-11-LABX-0048","funder_id":"https://openalex.org/F4320326804","funder_display_name":"Universit\u00e9 de Lyon"},{"id":"https://openalex.org/G6876561401","display_name":null,"funder_award_id":"ANR-18","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8788419517","display_name":null,"funder_award_id":"ANR-18-CE45-0023-03","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320326804","display_name":"Universit\u00e9 de Lyon","ror":"https://ror.org/01rk35k63"},{"id":"https://openalex.org/F4320330080","display_name":"Laboratoire d'Excellence Ecofect","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4226163113.pdf","grobid_xml":"https://content.openalex.org/works/W4226163113.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W1847626991","https://openalex.org/W1964114385","https://openalex.org/W1970779075","https://openalex.org/W1977203045","https://openalex.org/W1987109029","https://openalex.org/W2010173857","https://openalex.org/W2012577893","https://openalex.org/W2020685534","https://openalex.org/W2038885294","https://openalex.org/W2058942402","https://openalex.org/W2063854986","https://openalex.org/W2067052005","https://openalex.org/W2075251971","https://openalex.org/W2076513103","https://openalex.org/W2095589166","https://openalex.org/W2105512180","https://openalex.org/W2123634285","https://openalex.org/W2129375080","https://openalex.org/W2141545875","https://openalex.org/W2155221318","https://openalex.org/W2166985142","https://openalex.org/W2168804240","https://openalex.org/W2299194411","https://openalex.org/W2491526655","https://openalex.org/W2518828632","https://openalex.org/W2570629027","https://openalex.org/W2612568060","https://openalex.org/W2621349699","https://openalex.org/W2623546919","https://openalex.org/W2757234574","https://openalex.org/W2760415787","https://openalex.org/W2760535993","https://openalex.org/W2768414327","https://openalex.org/W2795460076","https://openalex.org/W2802291136","https://openalex.org/W2888385957","https://openalex.org/W2908300237","https://openalex.org/W2950647373","https://openalex.org/W2952938648","https://openalex.org/W2953614989","https://openalex.org/W2990357870","https://openalex.org/W2991509871","https://openalex.org/W2993894543","https://openalex.org/W2997831639","https://openalex.org/W3005287223","https://openalex.org/W3013821085","https://openalex.org/W3024161231","https://openalex.org/W3037155407","https://openalex.org/W3124913040","https://openalex.org/W3156771028","https://openalex.org/W3164156820","https://openalex.org/W3209413160","https://openalex.org/W6638923253","https://openalex.org/W6641060665","https://openalex.org/W6643010226","https://openalex.org/W6644611193","https://openalex.org/W6646965438","https://openalex.org/W6655535561","https://openalex.org/W6669561548","https://openalex.org/W6674565422","https://openalex.org/W6675955459","https://openalex.org/W6678255572","https://openalex.org/W6682975932","https://openalex.org/W6685242552","https://openalex.org/W6697049272","https://openalex.org/W6726786529","https://openalex.org/W6738943072","https://openalex.org/W6739408694","https://openalex.org/W6744236317","https://openalex.org/W6744336315","https://openalex.org/W6744803158","https://openalex.org/W6753230748","https://openalex.org/W6754091166","https://openalex.org/W6758160985","https://openalex.org/W6762957822","https://openalex.org/W6764999004","https://openalex.org/W6773405778","https://openalex.org/W6775404552"],"related_works":["https://openalex.org/W3129816939","https://openalex.org/W2912862995","https://openalex.org/W2985427592","https://openalex.org/W2101501829","https://openalex.org/W2400569965","https://openalex.org/W2950199998","https://openalex.org/W2560421304","https://openalex.org/W2951387065","https://openalex.org/W4385727351","https://openalex.org/W4306798985"],"abstract_inverted_index":{"Differentiation":[0],"can":[1,64,125],"be":[2,58,126],"modeled":[3],"at":[4],"the":[5,15,47,73,129,144,158,177,184,192],"single":[6],"cell":[7,35,51],"level":[8],"as":[9,43,128,133,137],"a":[10,44,76,96,99,104,140,164,188],"stochastic":[11],"process":[12,42],"resulting":[13],"from":[14,78,91,95,106,167],"dynamical":[16],"functioning":[17],"of":[18,46,50,75,115,132,143,147,160,179,187,194],"an":[19],"underlying":[20],"Gene":[21],"Regulatory":[22],"Network":[23],"(GRN),":[24],"driving":[25],"stem":[26],"or":[27,32],"progenitor":[28],"cells":[29,148],"to":[30,40,57,67,151,162],"one":[31],"many":[33,134],"differentiated":[34],"types.":[36,52],"Metastability":[37],"seems":[38],"inherent":[39],"differentiation":[41],"consequence":[45],"limited":[48],"number":[49],"Moreover,":[53],"mRNA":[54],"is":[55,183],"known":[56],"generally":[59],"produced":[60],"by":[61],"bursts,":[62],"which":[63,110,190],"give":[65],"rise":[66],"highly":[68],"variable":[69],"non-Gaussian":[70],"behavior,":[71],"making":[72],"estimation":[74],"GRN":[77,105,166,198],"transcriptional":[79,118],"profiles":[80],"challenging.":[81],"In":[82],"this":[83,182],"article,":[84],"we":[85],"present":[86],"CARDAMOM":[87,161],"(Cell":[88],"type":[89],"Analysis":[90],"scRna-seq":[92],"Data":[93],"achieved":[94],"Mixture":[97],"MOdel),":[98],"new":[100],"algorithm":[101],"for":[102,196],"inferring":[103],"timestamped":[107],"scRNA-seq":[108],"data,":[109],"crucially":[111],"exploits":[112],"these":[113],"notions":[114],"metastability":[116,195],"and":[117],"bursting.":[119],"We":[120,156],"show":[121],"that":[122],"such":[123],"inference":[124],"seen":[127],"successive":[130],"resolution":[131],"regression":[135],"problem":[136],"timepoints,":[138],"after":[139],"preliminary":[141],"clustering":[142],"whole":[145],"set":[146],"with":[149,172],"regards":[150],"their":[152],"associated":[153],"bursts":[154],"frequency.":[155],"demonstrate":[157],"ability":[159],"infer":[163],"reliable":[165],"in":[168],"silico":[169],"expression":[170],"datasets,":[171],"good":[173],"computational":[174],"speed.":[175],"To":[176],"best":[178],"our":[180],"knowledge,":[181],"first":[185],"description":[186],"method":[189],"uses":[191],"concept":[193],"performing":[197],"inference.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
