{"id":"https://openalex.org/W1768968559","doi":"https://doi.org/10.3233/ifs-151550","title":"Classifying sequences by the optimized dissimilarity space embedding approach: A case study on the solubility analysis of the E. coli proteome","display_name":"Classifying sequences by the optimized dissimilarity space embedding approach: A case study on the solubility analysis of the E. coli proteome","publication_year":2015,"publication_date":"2015-08-10","ids":{"openalex":"https://openalex.org/W1768968559","doi":"https://doi.org/10.3233/ifs-151550","mag":"1768968559"},"language":"en","primary_location":{"id":"doi:10.3233/ifs-151550","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ifs-151550","pdf_url":null,"source":{"id":"https://openalex.org/S179157397","display_name":"Journal of Intelligent & Fuzzy Systems","issn_l":"1064-1246","issn":["1064-1246","1875-8967"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent &amp; Fuzzy Systems","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1408.3873","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Lorenzo Livi","orcid":null},"institutions":[{"id":"https://openalex.org/I530967","display_name":"Toronto Metropolitan University","ror":"https://ror.org/05g13zd79","country_code":"CA","type":"education","lineage":["https://openalex.org/I530967"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Lorenzo Livi","raw_affiliation_strings":["Department of Computer Science, Ryerson University, Toronto, ON, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Ryerson University, Toronto, ON, Canada","institution_ids":["https://openalex.org/I530967"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Antonello Rizzi","orcid":null},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Antonello Rizzi","raw_affiliation_strings":["Department of Information Engineering, Electronics, and Telecommunications, SAPIENZA University of Rome, via Eudossiana, Rome, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, Electronics, and Telecommunications, SAPIENZA University of Rome, via Eudossiana, Rome, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"last","author":{"id":null,"display_name":"Alireza Sadeghian","orcid":null},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alireza Sadeghian","raw_affiliation_strings":["Department of Information Engineering, Electronics, and Telecommunications, SAPIENZA University of Rome, via Eudossiana, Rome, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, Electronics, and Telecommunications, SAPIENZA University of Rome, via Eudossiana, Rome, Italy","institution_ids":["https://openalex.org/I861853513"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I530967"],"apc_list":null,"apc_paid":null,"fwci":0.1506,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.55469401,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"28","issue":"6","first_page":"2725","last_page":"2733"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.79339998960495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.79339998960495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.04360000044107437,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.03689999878406525,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.7074000239372253},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.6848999857902527},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5328999757766724},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5268999934196472},{"id":"https://openalex.org/keywords/generality","display_name":"Generality","score":0.45590001344680786},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4422999918460846},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.36550000309944153},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.3610999882221222}],"concepts":[{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.7074000239372253},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.6848999857902527},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5715000033378601},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5328999757766724},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5268999934196472},{"id":"https://openalex.org/C2780767217","wikidata":"https://www.wikidata.org/wiki/Q5532421","display_name":"Generality","level":2,"score":0.45590001344680786},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45570001006126404},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4422999918460846},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4341000020503998},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.36550000309944153},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.3610999882221222},{"id":"https://openalex.org/C155574463","wikidata":"https://www.wikidata.org/wiki/Q170731","display_name":"Solubility","level":2,"score":0.358599990606308},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.358599990606308},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.3424000144004822},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.33869999647140503},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.28780001401901245},{"id":"https://openalex.org/C2775997480","wikidata":"https://www.wikidata.org/wiki/Q586277","display_name":"Degree (music)","level":2,"score":0.2847000062465668},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.2651999890804291},{"id":"https://openalex.org/C30711495","wikidata":"https://www.wikidata.org/wiki/Q289411","display_name":"Sequence space","level":3,"score":0.2621999979019165},{"id":"https://openalex.org/C197640229","wikidata":"https://www.wikidata.org/wiki/Q2534066","display_name":"Predictability","level":2,"score":0.2556000053882599}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3233/ifs-151550","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ifs-151550","pdf_url":null,"source":{"id":"https://openalex.org/S179157397","display_name":"Journal of Intelligent & Fuzzy Systems","issn_l":"1064-1246","issn":["1064-1246","1875-8967"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Intelligent &amp; Fuzzy Systems","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:1408.3873","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1408.3873","pdf_url":"https://arxiv.org/pdf/1408.3873","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:iris.uniroma1.it:11573/793956","is_oa":false,"landing_page_url":"http://hdl.handle.net/11573/793956","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1408.3873","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1408.3873","pdf_url":"https://arxiv.org/pdf/1408.3873","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W57898250","https://openalex.org/W152527681","https://openalex.org/W574643040","https://openalex.org/W1916479014","https://openalex.org/W1971676152","https://openalex.org/W1976410124","https://openalex.org/W1983498697","https://openalex.org/W1984806179","https://openalex.org/W1992138932","https://openalex.org/W1993282040","https://openalex.org/W1997102766","https://openalex.org/W2000970244","https://openalex.org/W2003627696","https://openalex.org/W2008874887","https://openalex.org/W2012399061","https://openalex.org/W2014050554","https://openalex.org/W2015349708","https://openalex.org/W2023200991","https://openalex.org/W2023625808","https://openalex.org/W2024096326","https://openalex.org/W2028529745","https://openalex.org/W2029651301","https://openalex.org/W2041063421","https://openalex.org/W2041775680","https://openalex.org/W2043087411","https://openalex.org/W2050047352","https://openalex.org/W2053514414","https://openalex.org/W2055075080","https://openalex.org/W2060677448","https://openalex.org/W2061301953","https://openalex.org/W2074164494","https://openalex.org/W2074338079","https://openalex.org/W2075555551","https://openalex.org/W2112270878","https://openalex.org/W2113224918","https://openalex.org/W2113772493","https://openalex.org/W2119246926","https://openalex.org/W2129021863","https://openalex.org/W2140321362","https://openalex.org/W2152057414","https://openalex.org/W2166299063","https://openalex.org/W2168104999","https://openalex.org/W2171533950","https://openalex.org/W2400456267","https://openalex.org/W2460772544","https://openalex.org/W4230367971","https://openalex.org/W4231339208","https://openalex.org/W6654230100"],"related_works":[],"abstract_inverted_index":{"Abstract":[0],"We":[1],"evaluate":[2],"a":[3,35,74,140,148],"version":[4],"of":[5,22,24,54,83,97,101,115,129,133,150,174,183],"the":[6,19,50,55,58,81,84,95,98,102,123,126,153,175,179,184],"recently-proposed":[7],"classification":[8,36],"system":[9,29,37],"named":[10],"Optimized":[11],"Dissimilarity":[12],"Space":[13],"Embedding":[14],"(ODSE)":[15],"that":[16,166],"operates":[17],"in":[18],"input":[20,56,66],"space":[21,52],"sequences":[23,88],"generic":[25],"objects.":[26],"The":[27,158],"ODSE":[28,46,85,176],"has":[30],"been":[31,168],"originally":[32],"presented":[33],"as":[34,41,147],"for":[38,87,187],"patterns":[39],"represented":[40,146],"labeled":[42],"graphs.":[43],"However,":[44],"since":[45],"is":[47,70,111,119,136,145],"founded":[48],"on":[49],"dissimilarity":[51,76],"representation":[53],"data,":[57],"classifier":[59,86],"can":[60],"be":[61],"easily":[62],"adapted":[63],"to":[64,72,122],"any":[65],"domain":[67],"where":[68],"it":[69,144],"possible":[71],"define":[73],"meaningful":[75],"measure.":[77],"Here":[78],"we":[79,164],"demonstrate":[80],"effectiveness":[82],"by":[89],"considering":[90],"an":[91,112],"application":[92],"dealing":[93],"with":[94,139,170],"recognition":[96],"solubility":[99,141],"degree":[100,142],"Escherichia":[103],"coli":[104],"proteome.":[105],"Solubility,":[106],"or":[107],"analogously":[108],"aggregation":[109],"propensity,":[110],"important":[113],"property":[114],"protein":[116,132],"molecules,":[117],"which":[118,163],"intimately":[120],"related":[121],"mechanisms":[124],"underlying":[125],"chemico-physical":[127],"process":[128],"folding.":[130],"Each":[131],"our":[134],"dataset":[135],"initially":[137],"associated":[138],"and":[143,181],"sequence":[149],"symbols,":[151],"denoting":[152],"20":[154],"amino":[155],"acid":[156],"residues.":[157],"herein":[159],"obtained":[160],"computational":[161],"results,":[162],"stress":[165],"have":[167],"achieved":[169],"no":[171],"context-dependent":[172],"tuning":[173],"system,":[177],"confirm":[178],"validity":[180],"generality":[182],"ODSE-based":[185],"approach":[186],"structured":[188],"data":[189],"classification.":[190]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-06-24T00:00:00"}
