{"id":"https://openalex.org/W4376273038","doi":"https://doi.org/10.3233/ida-216488","title":"An agglomerative hierarchical clustering approach to identify coexisting bacteria in groups of bacterial vaginosis patients","display_name":"An agglomerative hierarchical clustering approach to identify coexisting bacteria in groups of bacterial vaginosis patients","publication_year":2023,"publication_date":"2023-05-12","ids":{"openalex":"https://openalex.org/W4376273038","doi":"https://doi.org/10.3233/ida-216488"},"language":"en","primary_location":{"id":"doi:10.3233/ida-216488","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ida-216488","pdf_url":null,"source":{"id":"https://openalex.org/S2498839158","display_name":"Intelligent Data Analysis","issn_l":"1088-467X","issn":["1088-467X","1571-4128"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Intelligent Data Analysis","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091929648","display_name":"Henry Jes\u00fas Hern\u00e1ndez-G\u00f3mez","orcid":null},"institutions":[{"id":"https://openalex.org/I93173995","display_name":"Universidad Ju\u00e1rez Aut\u00f3noma de Tabasco","ror":"https://ror.org/04ee58018","country_code":"MX","type":"education","lineage":["https://openalex.org/I93173995"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Henry Jes\u00fas Hern\u00e1ndez-G\u00f3mez","raw_affiliation_strings":["Academic Division of Sciences and Information Technologies, Juarez Autonomous University of Tabasco, Cunduac\u00e1n-Jalpa KM highway. 1 Col. The Esmeralda, Cunduac\u00e1n, Tabasco, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academic Division of Sciences and Information Technologies, Juarez Autonomous University of Tabasco, Cunduac\u00e1n-Jalpa KM highway. 1 Col. The Esmeralda, Cunduac\u00e1n, Tabasco, Mexico","institution_ids":["https://openalex.org/I93173995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089840065","display_name":"Juana Canul-Reich","orcid":"https://orcid.org/0000-0003-1893-1332"},"institutions":[{"id":"https://openalex.org/I93173995","display_name":"Universidad Ju\u00e1rez Aut\u00f3noma de Tabasco","ror":"https://ror.org/04ee58018","country_code":"MX","type":"education","lineage":["https://openalex.org/I93173995"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Juana Canul-Reich","raw_affiliation_strings":["Academic Division of Sciences and Information Technologies, Juarez Autonomous University of Tabasco, Cunduac\u00e1n-Jalpa KM highway. 1 Col. The Esmeralda, Cunduac\u00e1n, Tabasco, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academic Division of Sciences and Information Technologies, Juarez Autonomous University of Tabasco, Cunduac\u00e1n-Jalpa KM highway. 1 Col. The Esmeralda, Cunduac\u00e1n, Tabasco, Mexico","institution_ids":["https://openalex.org/I93173995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063185932","display_name":"Betania Hern\u00e1ndez-Oca\u00f1a","orcid":"https://orcid.org/0000-0001-5700-7615"},"institutions":[{"id":"https://openalex.org/I93173995","display_name":"Universidad Ju\u00e1rez Aut\u00f3noma de Tabasco","ror":"https://ror.org/04ee58018","country_code":"MX","type":"education","lineage":["https://openalex.org/I93173995"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Betania Hern\u00e1ndez-Oca\u00f1a","raw_affiliation_strings":["Academic Division of Sciences and Information Technologies, Juarez Autonomous University of Tabasco, Cunduac\u00e1n-Jalpa KM highway. 1 Col. The Esmeralda, Cunduac\u00e1n, Tabasco, Mexico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academic Division of Sciences and Information Technologies, Juarez Autonomous University of Tabasco, Cunduac\u00e1n-Jalpa KM highway. 1 Col. The Esmeralda, Cunduac\u00e1n, Tabasco, Mexico","institution_ids":["https://openalex.org/I93173995"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057975993","display_name":"Erick de la Cruz Hern\u00e1ndez","orcid":null},"institutions":[{"id":"https://openalex.org/I93173995","display_name":"Universidad Ju\u00e1rez Aut\u00f3noma de Tabasco","ror":"https://ror.org/04ee58018","country_code":"MX","type":"education","lineage":["https://openalex.org/I93173995"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Erick de la Cruz Hern\u00e1ndez","raw_affiliation_strings":["Comalcalco Multidisciplinary Academic Division, Juarez Autonomous University of Tabasco, Rancher\u00eda South 4th. Section. Comalcalco, Tabasco, Mexico","E-mail:"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Comalcalco Multidisciplinary Academic Division, Juarez Autonomous University of Tabasco, Rancher\u00eda South 4th. Section. Comalcalco, Tabasco, Mexico","institution_ids":["https://openalex.org/I93173995"]},{"raw_affiliation_string":"E-mail:","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5089840065"],"corresponding_institution_ids":["https://openalex.org/I93173995"],"apc_list":null,"apc_paid":null,"fwci":0.7119,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.67165911,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"27","issue":"3","first_page":"583","last_page":"611"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11934","display_name":"Syphilis Diagnosis and Treatment","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10327","display_name":"Adolescent Sexual and Reproductive Health","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/3600","display_name":"General Health Professions"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bacterial-vaginosis","display_name":"Bacterial vaginosis","score":0.8969359993934631},{"id":"https://openalex.org/keywords/gardnerella-vaginalis","display_name":"Gardnerella vaginalis","score":0.8061968088150024},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5212286710739136},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.5031632781028748},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.49088674783706665},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.48495081067085266},{"id":"https://openalex.org/keywords/lactobacillus-crispatus","display_name":"Lactobacillus crispatus","score":0.45148757100105286},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.44101038575172424},{"id":"https://openalex.org/keywords/mycoplasma-hominis","display_name":"Mycoplasma hominis","score":0.41322648525238037},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4127305746078491},{"id":"https://openalex.org/keywords/mycoplasma","display_name":"Mycoplasma","score":0.2766575217247009},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.24658611416816711},{"id":"https://openalex.org/keywords/lactobacillus","display_name":"Lactobacillus","score":0.1968952715396881},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17830047011375427},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.14150449633598328},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13497579097747803}],"concepts":[{"id":"https://openalex.org/C2779952448","wikidata":"https://www.wikidata.org/wiki/Q804521","display_name":"Bacterial vaginosis","level":2,"score":0.8969359993934631},{"id":"https://openalex.org/C2780018483","wikidata":"https://www.wikidata.org/wiki/Q127375","display_name":"Gardnerella vaginalis","level":3,"score":0.8061968088150024},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5212286710739136},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.5031632781028748},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.49088674783706665},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.48495081067085266},{"id":"https://openalex.org/C2780236403","wikidata":"https://www.wikidata.org/wiki/Q2355641","display_name":"Lactobacillus crispatus","level":4,"score":0.45148757100105286},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.44101038575172424},{"id":"https://openalex.org/C2779186046","wikidata":"https://www.wikidata.org/wiki/Q2616475","display_name":"Mycoplasma hominis","level":3,"score":0.41322648525238037},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4127305746078491},{"id":"https://openalex.org/C2778838687","wikidata":"https://www.wikidata.org/wiki/Q210975","display_name":"Mycoplasma","level":2,"score":0.2766575217247009},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.24658611416816711},{"id":"https://openalex.org/C2780206646","wikidata":"https://www.wikidata.org/wiki/Q1061596","display_name":"Lactobacillus","level":3,"score":0.1968952715396881},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17830047011375427},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.14150449633598328},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13497579097747803},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/ida-216488","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ida-216488","pdf_url":null,"source":{"id":"https://openalex.org/S2498839158","display_name":"Intelligent Data Analysis","issn_l":"1088-467X","issn":["1088-467X","1571-4128"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Intelligent Data Analysis","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities","score":0.800000011920929}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1501500081","https://openalex.org/W1511490662","https://openalex.org/W1868667984","https://openalex.org/W1987971958","https://openalex.org/W1990122644","https://openalex.org/W1999355944","https://openalex.org/W2016381774","https://openalex.org/W2023695505","https://openalex.org/W2026975060","https://openalex.org/W2027548763","https://openalex.org/W2030868865","https://openalex.org/W2049017883","https://openalex.org/W2052193862","https://openalex.org/W2071949631","https://openalex.org/W2112321456","https://openalex.org/W2133707124","https://openalex.org/W2140989045","https://openalex.org/W2153077944","https://openalex.org/W2157689076","https://openalex.org/W2167194504","https://openalex.org/W2315205978","https://openalex.org/W2583279231","https://openalex.org/W2793350103","https://openalex.org/W2899429778","https://openalex.org/W2963235994","https://openalex.org/W2998715069","https://openalex.org/W3024851520","https://openalex.org/W3047766803","https://openalex.org/W3082788671","https://openalex.org/W3133829926","https://openalex.org/W4231410305","https://openalex.org/W4246994612","https://openalex.org/W6755714370"],"related_works":["https://openalex.org/W2524383587","https://openalex.org/W808393907","https://openalex.org/W4251512368","https://openalex.org/W2904277702","https://openalex.org/W4251379343","https://openalex.org/W2137124411","https://openalex.org/W2113818035","https://openalex.org/W3172612082","https://openalex.org/W3012096672","https://openalex.org/W4231707265"],"abstract_inverted_index":{"Polymicrobial":[0],"syndromes":[1],"such":[2],"as":[3],"Bacterial":[4],"Vaginosis":[5],"(BV),":[6],"where":[7],"there":[8],"is":[9,105],"a":[10,21,43,51,74,197],"great":[11],"diversity":[12],"of":[13,32,37,45,55,62,85,112,183,210],"microorganisms":[14],"and":[15,93,156,188],"causal":[16],"connotations,":[17],"turn":[18],"it":[19,104,175],"into":[20],"disease":[22],"with":[23,47,89,121,128,133,154,164,185,212],"complex":[24,204],"dynamics":[25,205],"in":[26,30,81,135,140,208],"the":[27,100,136,141,144,172,203],"bacteria\u2019s":[28,63],"coexistence":[29],"groups":[31,56,111,209],"patients.":[33,113],"The":[34,65,114],"main":[35],"aim":[36],"this":[38,191],"study":[39],"was":[40,71,176],"to":[41,49,57,73,107,178,195],"explore":[42],"dataset":[44,76],"patients":[46,120,211],"BV":[48,75,122],"determine":[50],"more":[52],"informed":[53],"number":[54,182],"create":[58,196],"for":[59],"further":[60],"analysis":[61],"coexistence.":[64],"Agglomerative":[66],"Hierarchical":[67],"Clustering":[68],"(AHC)":[69],"algorithm":[70],"applied":[72],"from":[77],"an":[78,180],"urban":[79],"population":[80],"southeastern":[82],"Mexico":[83],"consisting":[84],"201":[86],"patient":[87,91],"records":[88],"59":[90],"attributes":[92],"three":[94],"classes":[95],"(BV-positive,":[96],"BV-negative,":[97],"BV-indeterminate).":[98],"In":[99],"clustering":[101,198],"results":[102],"obtained,":[103],"possible":[106,177],"identify":[108,179],"different":[109],"remarkable":[110],"most":[115],"prevalent":[116],"coexisting":[117,145],"bacteria":[118,146,207],"among":[119],"were":[123,147],"Atopobium":[124,130,148,157],"+":[125,131,149,151,158,161],"Gardnerella":[126,159],"vaginalis":[127,160],"37.50%,":[129],"Megasphaera":[132,150],"15.68%":[134],"first":[137],"experiment.":[138],"Whereas,":[139],"second":[142],"experiment,":[143],"Mycoplasma":[152,162],"hominis":[153,163],"33.33%":[155],"25%.":[165],"Finally,":[166],"we":[167],"provided":[168],"evidence":[169],"that":[170,200],"via":[171],"AHC":[173],"algorithm,":[174],"optimal":[181],"clusters":[184],"high":[186],"intra-similarity":[187],"inter-dissimilarity.":[189],"Furthermore,":[190],"approach":[192],"allowed":[193],"us":[194],"model":[199],"helps":[201],"analyze":[202],"between":[206],"BV.":[213]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2025-10-10T00:00:00"}
