{"id":"https://openalex.org/W4206165632","doi":"https://doi.org/10.3233/ida-215745","title":"DDREL: From drug-drug relationships to drug repurposing","display_name":"DDREL: From drug-drug relationships to drug repurposing","publication_year":2022,"publication_date":"2022-01-14","ids":{"openalex":"https://openalex.org/W4206165632","doi":"https://doi.org/10.3233/ida-215745"},"language":"en","primary_location":{"id":"doi:10.3233/ida-215745","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ida-215745","pdf_url":null,"source":{"id":"https://openalex.org/S2498839158","display_name":"Intelligent Data Analysis","issn_l":"1088-467X","issn":["1088-467X","1571-4128"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Intelligent Data Analysis","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025790844","display_name":"Milad Allahgholi","orcid":null},"institutions":[{"id":"https://openalex.org/I67009956","display_name":"Iran University of Science and Technology","ror":"https://ror.org/01jw2p796","country_code":"IR","type":"education","lineage":["https://openalex.org/I67009956"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Milad Allahgholi","raw_affiliation_strings":["School of Computer Engineering, Iran University of Science and Technology, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Iran University of Science and Technology, Tehran, Iran","institution_ids":["https://openalex.org/I67009956"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101951657","display_name":"Hossein Rahmani","orcid":"https://orcid.org/0000-0003-2988-6178"},"institutions":[{"id":"https://openalex.org/I67009956","display_name":"Iran University of Science and Technology","ror":"https://ror.org/01jw2p796","country_code":"IR","type":"education","lineage":["https://openalex.org/I67009956"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Hossein Rahmani","raw_affiliation_strings":["School of Computer Engineering, Iran University of Science and Technology, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Iran University of Science and Technology, Tehran, Iran","institution_ids":["https://openalex.org/I67009956"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083525709","display_name":"Delaram Javdani","orcid":null},"institutions":[{"id":"https://openalex.org/I67009956","display_name":"Iran University of Science and Technology","ror":"https://ror.org/01jw2p796","country_code":"IR","type":"education","lineage":["https://openalex.org/I67009956"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Delaram Javdani","raw_affiliation_strings":["School of Computer Engineering, Iran University of Science and Technology, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Iran University of Science and Technology, Tehran, Iran","institution_ids":["https://openalex.org/I67009956"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014996863","display_name":"Zahra Sadeghi-Adl","orcid":null},"institutions":[{"id":"https://openalex.org/I67009956","display_name":"Iran University of Science and Technology","ror":"https://ror.org/01jw2p796","country_code":"IR","type":"education","lineage":["https://openalex.org/I67009956"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Zahra Sadeghi-Adl","raw_affiliation_strings":["School of Computer Engineering, Iran University of Science and Technology, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Iran University of Science and Technology, Tehran, Iran","institution_ids":["https://openalex.org/I67009956"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026643759","display_name":"Andreas Bender","orcid":"https://orcid.org/0000-0002-6683-7546"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andreas Bender","raw_affiliation_strings":["Centre for Molecular Informatics, Department of Chemistry, University of Cambridge, Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Informatics, Department of Chemistry, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059582444","display_name":"Dezs\u0151 M\u00f3dos","orcid":"https://orcid.org/0000-0001-9412-6867"},"institutions":[{"id":"https://openalex.org/I2799300731","display_name":"Norwich Research Park","ror":"https://ror.org/0062dz060","country_code":"GB","type":"archive","lineage":["https://openalex.org/I2799300731"]},{"id":"https://openalex.org/I4210100714","display_name":"Earlham Institute","ror":"https://ror.org/018cxtf62","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210100714"]},{"id":"https://openalex.org/I3018370718","display_name":"Quadram Institute","ror":"https://ror.org/04td3ys19","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799693246","https://openalex.org/I3018370718","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Dezs\u00f6 M\u00f3dos","raw_affiliation_strings":["Earlham Institute, Norwich Research Park, Norwich, Norfolk, UK","Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK"],"affiliations":[{"raw_affiliation_string":"Earlham Institute, Norwich Research Park, Norwich, Norfolk, UK","institution_ids":["https://openalex.org/I2799300731","https://openalex.org/I4210100714"]},{"raw_affiliation_string":"Quadram Institute Bioscience, Norwich Research Park, Norwich, Norfolk, UK","institution_ids":["https://openalex.org/I3018370718","https://openalex.org/I2799300731"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112071698","display_name":"Gerhard Wei\u00df","orcid":"https://orcid.org/0000-0002-6190-2513"},"institutions":[{"id":"https://openalex.org/I34352273","display_name":"Maastricht University","ror":"https://ror.org/02jz4aj89","country_code":"NL","type":"education","lineage":["https://openalex.org/I34352273"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Gerhard Weiss","raw_affiliation_strings":["Department of Data Science and Knowledge Engineering (DKE), Maastricht University, Maastricht, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Data Science and Knowledge Engineering (DKE), Maastricht University, Maastricht, The Netherlands","institution_ids":["https://openalex.org/I34352273"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5101951657"],"corresponding_institution_ids":["https://openalex.org/I67009956"],"apc_list":null,"apc_paid":null,"fwci":0.5147,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.59758137,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"26","issue":"1","first_page":"221","last_page":"237"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9672999978065491,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.8689773082733154},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.7343093156814575},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5636082887649536},{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.561086118221283},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4374402165412903},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.3379209637641907},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3217731714248657},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32148849964141846},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3180919885635376},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19064325094223022},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12815752625465393}],"concepts":[{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.8689773082733154},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.7343093156814575},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5636082887649536},{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.561086118221283},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4374402165412903},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.3379209637641907},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3217731714248657},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32148849964141846},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3180919885635376},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19064325094223022},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12815752625465393}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3233/ida-215745","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ida-215745","pdf_url":null,"source":{"id":"https://openalex.org/S2498839158","display_name":"Intelligent Data Analysis","issn_l":"1088-467X","issn":["1088-467X","1571-4128"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Intelligent Data Analysis","raw_type":"journal-article"},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/d6a21445-6bd4-462a-9e5b-3fa66e09da7e","is_oa":false,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/d6a21445-6bd4-462a-9e5b-3fa66e09da7e","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Allahgholi, M, Rahmani, H, Javdani, D, Sadeghi-Adl, Z, Bender, A, Modos, D & Weiss, G 2022, 'DDREL: From drug-drug relationships to drug repurposing', Intelligent Data Analysis, vol. 26, no. 1, pp. 221-237. https://doi.org/10.3233/IDA-215745","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":76,"referenced_works":["https://openalex.org/W80463681","https://openalex.org/W188755909","https://openalex.org/W947140380","https://openalex.org/W1565935954","https://openalex.org/W1615991656","https://openalex.org/W1970270602","https://openalex.org/W1976582164","https://openalex.org/W1980001478","https://openalex.org/W1997106161","https://openalex.org/W2002922732","https://openalex.org/W2006414630","https://openalex.org/W2012746420","https://openalex.org/W2024862171","https://openalex.org/W2030745952","https://openalex.org/W2061941130","https://openalex.org/W2062418945","https://openalex.org/W2062941476","https://openalex.org/W2070476492","https://openalex.org/W2070741095","https://openalex.org/W2085860988","https://openalex.org/W2091671758","https://openalex.org/W2093021774","https://openalex.org/W2095877288","https://openalex.org/W2096729078","https://openalex.org/W2097834966","https://openalex.org/W2104070133","https://openalex.org/W2112946624","https://openalex.org/W2127058993","https://openalex.org/W2130354913","https://openalex.org/W2132773777","https://openalex.org/W2135505477","https://openalex.org/W2138275182","https://openalex.org/W2141432783","https://openalex.org/W2148373528","https://openalex.org/W2151357092","https://openalex.org/W2163107094","https://openalex.org/W2165891030","https://openalex.org/W2202042777","https://openalex.org/W2202954603","https://openalex.org/W2250539671","https://openalex.org/W2251157338","https://openalex.org/W2252211741","https://openalex.org/W2296604042","https://openalex.org/W2397757171","https://openalex.org/W2398749351","https://openalex.org/W2405317410","https://openalex.org/W2418314189","https://openalex.org/W2515248967","https://openalex.org/W2534581482","https://openalex.org/W2612436700","https://openalex.org/W2713273934","https://openalex.org/W2752901244","https://openalex.org/W2762358889","https://openalex.org/W2790457751","https://openalex.org/W2791596054","https://openalex.org/W2800642779","https://openalex.org/W2802301508","https://openalex.org/W2803614960","https://openalex.org/W2809398771","https://openalex.org/W2826750344","https://openalex.org/W2887766329","https://openalex.org/W2889454530","https://openalex.org/W2896002881","https://openalex.org/W2896479849","https://openalex.org/W2905174775","https://openalex.org/W2905349629","https://openalex.org/W2906083215","https://openalex.org/W2909895615","https://openalex.org/W2919674648","https://openalex.org/W2941339501","https://openalex.org/W2962997783","https://openalex.org/W2963642516","https://openalex.org/W2994900199","https://openalex.org/W3013769135","https://openalex.org/W3043872269","https://openalex.org/W6607784695"],"related_works":["https://openalex.org/W4387572939","https://openalex.org/W3114988578","https://openalex.org/W4387767168","https://openalex.org/W4390539447","https://openalex.org/W4385514295","https://openalex.org/W4390649784","https://openalex.org/W2797260394","https://openalex.org/W1980001478","https://openalex.org/W4322489931","https://openalex.org/W3035455406"],"abstract_inverted_index":{"Analyzing":[0],"the":[1,11,38,43,74,86,114,118,126,129,167,198],"relationships":[2,44,80],"among":[3,81],"various":[4,122,202],"drugs":[5,138,188],"is":[6,108],"an":[7],"essential":[8],"issue":[9],"in":[10,121,159,173,201],"field":[12],"of":[13,18,40,76,100,117,131,170,197],"computational":[14],"biology.":[15],"Different":[16],"kinds":[17],"informative":[19],"knowledge,":[20],"such":[21,179],"as":[22,60],"drug":[23,89,123,132,203],"repurposing,":[24],"can":[25,181],"be":[26,182],"extracted":[27],"from":[28],"drug-drug":[29],"relationships.":[30,53],"Scientific":[31],"literature":[32,70],"represents":[33],"a":[34,61,93],"rich":[35],"source":[36],"for":[37],"retrieval":[39],"knowledge":[41],"about":[42],"between":[45],"biological":[46],"concepts,":[47],"mainly":[48],"drug-drug,":[49],"disease-disease,":[50],"and":[51,78,92,192],"drug-disease":[52],"In":[54,136],"this":[55],"paper,":[56],"we":[57],"propose":[58],"DDREL":[59,83,107,127,164,176],"general-purpose":[62],"method":[63,91,165],"that":[64,139,178],"applies":[65],"deep":[66],"learning":[67],"on":[68,113],"scientific":[69],"to":[71,97,110,184],"automatically":[72],"extract":[73],"graph":[75],"syntactic":[77],"semantic":[79],"drugs.":[82],"remarkably":[84],"outperforms":[85],"existing":[87,115,195],"human":[88],"network":[90,95],"random":[94],"respected":[96],"average":[98],"similarities":[99],"drugs\u2019":[101],"anatomical":[102],"therapeutic":[103],"chemical":[104],"(ATC)":[105],"codes.":[106],"able":[109],"shed":[111],"light":[112],"deficiency":[116],"ATC":[119,199],"codes":[120,200],"groups.":[124,204],"From":[125],"graph,":[128],"history":[130],"discovery":[133],"became":[134],"visible.":[135],"addition,":[137],"had":[140],"repurposing":[141,187],"score":[142],"1":[143],"(diflunisal,":[144],"pargyline,":[145],"fenofibrate,":[146],"guanfacine,":[147],"chlorzoxazone,":[148],"doxazosin,":[149],"oxymetholone,":[150],"azathioprine,":[151],"drotaverine,":[152],"demecarium,":[153],"omifensine,":[154],"yohimbine)":[155],"were":[156],"already":[157],"used":[158,183],"additional":[160],"indication.":[161],"The":[162],"proposed":[163],"justifies":[166],"predictive":[168],"power":[169],"textual":[171],"data":[172,180],"PubMed":[174],"abstracts.":[175],"shows":[177],"1-":[185],"Predict":[186],"with":[189],"high":[190],"accuracy,":[191],"2-":[193],"Reveal":[194],"deficiencies":[196]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
