{"id":"https://openalex.org/W1737699519","doi":"https://doi.org/10.3233/ida-2011-0505","title":"Selecting different protein representations and classification algorithms in hierarchical protein function prediction","display_name":"Selecting different protein representations and classification algorithms in hierarchical protein function prediction","publication_year":2011,"publication_date":"2011-11-08","ids":{"openalex":"https://openalex.org/W1737699519","doi":"https://doi.org/10.3233/ida-2011-0505","mag":"1737699519"},"language":"en","primary_location":{"id":"doi:10.3233/ida-2011-0505","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ida-2011-0505","pdf_url":null,"source":{"id":"https://openalex.org/S2498839158","display_name":"Intelligent Data Analysis","issn_l":"1088-467X","issn":["1088-467X","1571-4128"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Intelligent Data Analysis","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088179577","display_name":"Carlos N. Silla","orcid":"https://orcid.org/0000-0002-1603-9378"},"institutions":[{"id":"https://openalex.org/I20581793","display_name":"University of Kent","ror":"https://ror.org/00xkeyj56","country_code":"GB","type":"education","lineage":["https://openalex.org/I20581793"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Carlos N. Silla","raw_affiliation_strings":["School of Computing and Centre for Biomedical Informatics, University of Kent, Canterbury, UK","School of Computing and Centre for Biomedical Informatics, University of Kent, Canterbury, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Computing and Centre for Biomedical Informatics, University of Kent, Canterbury, UK","institution_ids":["https://openalex.org/I20581793"]},{"raw_affiliation_string":"School of Computing and Centre for Biomedical Informatics, University of Kent, Canterbury, UK#TAB#","institution_ids":["https://openalex.org/I20581793"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087201377","display_name":"Alex A. Freitas","orcid":"https://orcid.org/0000-0001-9825-4700"},"institutions":[{"id":"https://openalex.org/I20581793","display_name":"University of Kent","ror":"https://ror.org/00xkeyj56","country_code":"GB","type":"education","lineage":["https://openalex.org/I20581793"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alex A. Freitas","raw_affiliation_strings":["School of Computing and Centre for Biomedical Informatics, University of Kent, Canterbury, UK","School of Computing and Centre for Biomedical Informatics, University of Kent, Canterbury, UK#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Computing and Centre for Biomedical Informatics, University of Kent, Canterbury, UK","institution_ids":["https://openalex.org/I20581793"]},{"raw_affiliation_string":"School of Computing and Centre for Biomedical Informatics, University of Kent, Canterbury, UK#TAB#","institution_ids":["https://openalex.org/I20581793"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5088179577"],"corresponding_institution_ids":["https://openalex.org/I20581793"],"apc_list":null,"apc_paid":null,"fwci":0.5322,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.64356289,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"15","issue":"6","first_page":"979","last_page":"999"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.8156881332397461},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.6428729295730591},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6192653179168701},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6152926087379456},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5698944926261902},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5348070859909058},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5122496485710144},{"id":"https://openalex.org/keywords/random-subspace-method","display_name":"Random subspace method","score":0.43626222014427185},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.43557560443878174},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3631465435028076},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3214273452758789},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.3065244257450104}],"concepts":[{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.8156881332397461},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.6428729295730591},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6192653179168701},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6152926087379456},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5698944926261902},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5348070859909058},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5122496485710144},{"id":"https://openalex.org/C106135958","wikidata":"https://www.wikidata.org/wiki/Q7291993","display_name":"Random subspace method","level":3,"score":0.43626222014427185},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.43557560443878174},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3631465435028076},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3214273452758789},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.3065244257450104},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3233/ida-2011-0505","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ida-2011-0505","pdf_url":null,"source":{"id":"https://openalex.org/S2498839158","display_name":"Intelligent Data Analysis","issn_l":"1088-467X","issn":["1088-467X","1571-4128"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Intelligent Data Analysis","raw_type":"journal-article"},{"id":"pmh:oai:kar.kent.ac.uk:30712","is_oa":false,"landing_page_url":"https://kar.kent.ac.uk/30712/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196264","display_name":"Kent Academic Repository (University of Kent)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20581793","host_organization_name":"University of Kent","host_organization_lineage":["https://openalex.org/I20581793"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W41890578","https://openalex.org/W85880394","https://openalex.org/W140777655","https://openalex.org/W163946091","https://openalex.org/W184712960","https://openalex.org/W564391039","https://openalex.org/W1020256256","https://openalex.org/W1504091442","https://openalex.org/W1565746575","https://openalex.org/W1570448133","https://openalex.org/W1582839075","https://openalex.org/W1620204465","https://openalex.org/W1820987858","https://openalex.org/W1922017469","https://openalex.org/W1977224551","https://openalex.org/W1978098535","https://openalex.org/W1982481323","https://openalex.org/W1984794455","https://openalex.org/W1995407213","https://openalex.org/W1996560871","https://openalex.org/W2005604222","https://openalex.org/W2024213882","https://openalex.org/W2026401830","https://openalex.org/W2041545801","https://openalex.org/W2047672715","https://openalex.org/W2081998091","https://openalex.org/W2086301041","https://openalex.org/W2090239801","https://openalex.org/W2091568186","https://openalex.org/W2100990314","https://openalex.org/W2103210188","https://openalex.org/W2114909890","https://openalex.org/W2116423958","https://openalex.org/W2117225622","https://openalex.org/W2119027485","https://openalex.org/W2121847038","https://openalex.org/W2125806930","https://openalex.org/W2126624551","https://openalex.org/W2127464112","https://openalex.org/W2139237500","https://openalex.org/W2141885858","https://openalex.org/W2144664963","https://openalex.org/W2150766729","https://openalex.org/W2156630822","https://openalex.org/W2169284845","https://openalex.org/W2171066191","https://openalex.org/W2966207845"],"related_works":["https://openalex.org/W1964832275","https://openalex.org/W2389865566","https://openalex.org/W2407804800","https://openalex.org/W2388864896","https://openalex.org/W2888937984","https://openalex.org/W2031173026","https://openalex.org/W2031651184","https://openalex.org/W2913388591","https://openalex.org/W2117265009","https://openalex.org/W108062576"],"abstract_inverted_index":{"Automatically":[0],"inferring":[1],"the":[2,19,28,31,35],"function":[3,24],"of":[4,21,30,37],"unknown":[5],"proteins":[6],"is":[7],"a":[8],"challenging":[9],"task":[10,20],"in":[11,18],"proteomics.":[12],"There":[13],"are":[14,27],"two":[15],"major":[16],"problems":[17],"computational":[22],"protein":[23,32],"prediction,":[25],"which":[26],"choice":[29,36],"representation":[33],"and":[34]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}