{"id":"https://openalex.org/W2144834566","doi":"https://doi.org/10.3233/ida-2010-0415","title":"From digital genetics to knowledge discovery: Perspectives in genetic network understanding","display_name":"From digital genetics to knowledge discovery: Perspectives in genetic network understanding","publication_year":2010,"publication_date":"2010-03-09","ids":{"openalex":"https://openalex.org/W2144834566","doi":"https://doi.org/10.3233/ida-2010-0415","mag":"2144834566"},"language":"en","primary_location":{"id":"doi:10.3233/ida-2010-0415","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ida-2010-0415","pdf_url":null,"source":{"id":"https://openalex.org/S2498839158","display_name":"Intelligent Data Analysis","issn_l":"1088-467X","issn":["1088-467X","1571-4128"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Intelligent Data Analysis","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041639459","display_name":"Guillaume Beslon","orcid":"https://orcid.org/0000-0001-8562-0732"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210155607","display_name":"Laboratoire d'Informatique en Images et Syst\u00e8mes d'Information","ror":"https://ror.org/04dv4he91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I1294671590","https://openalex.org/I188626449","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210155607","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Guillaume Beslon","raw_affiliation_strings":["IXXI, Institut Rh\u00f4ne-Alpin des Syst\u00e8mes Complexes, Lyon, F-69007, France","Universit\u00e9 de Lyon, CNRS, INSA-Lyon, LIRIS, UMR5205, F-69621, France","Artificial Evolution and Computational Biology","COMputational BIology and data miNING"],"affiliations":[{"raw_affiliation_string":"IXXI, Institut Rh\u00f4ne-Alpin des Syst\u00e8mes Complexes, Lyon, F-69007, France","institution_ids":[]},{"raw_affiliation_string":"Universit\u00e9 de Lyon, CNRS, INSA-Lyon, LIRIS, UMR5205, F-69621, France","institution_ids":["https://openalex.org/I4210155607","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Artificial Evolution and Computational Biology","institution_ids":[]},{"raw_affiliation_string":"COMputational BIology and data miNING","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101577501","display_name":"David P. Parsons","orcid":"https://orcid.org/0000-0003-0511-0703"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210155607","display_name":"Laboratoire d'Informatique en Images et Syst\u00e8mes d'Information","ror":"https://ror.org/04dv4he91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I1294671590","https://openalex.org/I188626449","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210155607","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"David P. Parsons","raw_affiliation_strings":["IXXI, Institut Rh\u00f4ne-Alpin des Syst\u00e8mes Complexes, Lyon, F-69007, France","Universit\u00e9 de Lyon, CNRS, INSA-Lyon, LIRIS, UMR5205, F-69621, France","COMputational BIology and data miNING","Artificial Evolution and Computational Biology"],"affiliations":[{"raw_affiliation_string":"IXXI, Institut Rh\u00f4ne-Alpin des Syst\u00e8mes Complexes, Lyon, F-69007, France","institution_ids":[]},{"raw_affiliation_string":"Universit\u00e9 de Lyon, CNRS, INSA-Lyon, LIRIS, UMR5205, F-69621, France","institution_ids":["https://openalex.org/I4210155607","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"COMputational BIology and data miNING","institution_ids":[]},{"raw_affiliation_string":"Artificial Evolution and Computational Biology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064290966","display_name":"Jos\u00e9-Mar\u00eda Pe\u00f1a","orcid":"https://orcid.org/0000-0002-3303-0455"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jose-Mar\u00eda Pe\u00f1a","raw_affiliation_strings":["DATSI, Universidad Politecnica de Madrid, Spain"],"affiliations":[{"raw_affiliation_string":"DATSI, Universidad Politecnica de Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015567447","display_name":"Christophe Rigotti","orcid":"https://orcid.org/0000-0003-1265-1479"},"institutions":[{"id":"https://openalex.org/I4210155607","display_name":"Laboratoire d'Informatique en Images et Syst\u00e8mes d'Information","ror":"https://ror.org/04dv4he91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I1294671590","https://openalex.org/I188626449","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210155607","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe Rigotti","raw_affiliation_strings":["IXXI, Institut Rh\u00f4ne-Alpin des Syst\u00e8mes Complexes, Lyon, F-69007, France","Universit\u00e9 de Lyon, CNRS, INSA-Lyon, LIRIS, UMR5205, F-69621, France","COMputational BIology and data miNING","Data Mining and Machine Learning","Artificial Evolution and Computational Biology"],"affiliations":[{"raw_affiliation_string":"IXXI, Institut Rh\u00f4ne-Alpin des Syst\u00e8mes Complexes, Lyon, F-69007, France","institution_ids":[]},{"raw_affiliation_string":"Universit\u00e9 de Lyon, CNRS, INSA-Lyon, LIRIS, UMR5205, F-69621, France","institution_ids":["https://openalex.org/I4210155607","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"COMputational BIology and data miNING","institution_ids":[]},{"raw_affiliation_string":"Data Mining and Machine Learning","institution_ids":[]},{"raw_affiliation_string":"Artificial Evolution and Computational Biology","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017158305","display_name":"Yolanda S\u00e1nchez-Dehesa","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210155607","display_name":"Laboratoire d'Informatique en Images et Syst\u00e8mes d'Information","ror":"https://ror.org/04dv4he91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I112936343","https://openalex.org/I1294671590","https://openalex.org/I188626449","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210155607","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yolanda Sanchez-Dehesa","raw_affiliation_strings":["IXXI, Institut Rh\u00f4ne-Alpin des Syst\u00e8mes Complexes, Lyon, F-69007, France","Universit\u00e9 de Lyon, CNRS, INSA-Lyon, LIRIS, UMR5205, F-69621, France","COMputational BIology and data miNING"],"affiliations":[{"raw_affiliation_string":"IXXI, Institut Rh\u00f4ne-Alpin des Syst\u00e8mes Complexes, Lyon, F-69007, France","institution_ids":[]},{"raw_affiliation_string":"Universit\u00e9 de Lyon, CNRS, INSA-Lyon, LIRIS, UMR5205, F-69621, France","institution_ids":["https://openalex.org/I4210155607","https://openalex.org/I100532134","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"COMputational BIology and data miNING","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5041639459"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210155607"],"apc_list":null,"apc_paid":null,"fwci":0.3965,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.6302834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"14","issue":"2","first_page":"173","last_page":"191"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.7807371020317078},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7032157778739929},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6387500762939453},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.5901902318000793},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.587774395942688},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.47115981578826904},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.457851767539978},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41749459505081177},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.40805238485336304},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3798188269138336},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34636229276657104},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1985875964164734},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16893404722213745},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12505683302879333},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.0857580304145813}],"concepts":[{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.7807371020317078},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7032157778739929},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6387500762939453},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.5901902318000793},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.587774395942688},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.47115981578826904},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.457851767539978},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41749459505081177},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.40805238485336304},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3798188269138336},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34636229276657104},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1985875964164734},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16893404722213745},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12505683302879333},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0857580304145813},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3233/ida-2010-0415","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ida-2010-0415","pdf_url":null,"source":{"id":"https://openalex.org/S2498839158","display_name":"Intelligent Data Analysis","issn_l":"1088-467X","issn":["1088-467X","1571-4128"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Intelligent Data Analysis","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-00697024v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-00697024","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Intelligent Data Analysis, 2010, 14 (2), pp.173--191. &#x27E8;10.3233/IDA-2010-0415&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310654","display_name":"Indian National Science Academy","ror":"https://ror.org/051475v86"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W48314967","https://openalex.org/W104630046","https://openalex.org/W1599969036","https://openalex.org/W1837652160","https://openalex.org/W1866071011","https://openalex.org/W1963522244","https://openalex.org/W1968080026","https://openalex.org/W1973081915","https://openalex.org/W1978486653","https://openalex.org/W1983153145","https://openalex.org/W1987841593","https://openalex.org/W1995991050","https://openalex.org/W2018041072","https://openalex.org/W2019998456","https://openalex.org/W2020236244","https://openalex.org/W2022589976","https://openalex.org/W2023348596","https://openalex.org/W2043004358","https://openalex.org/W2053729675","https://openalex.org/W2056188428","https://openalex.org/W2061425021","https://openalex.org/W2066718232","https://openalex.org/W2066771339","https://openalex.org/W2076687415","https://openalex.org/W2092488734","https://openalex.org/W2095293504","https://openalex.org/W2098045561","https://openalex.org/W2104434621","https://openalex.org/W2105539670","https://openalex.org/W2108723074","https://openalex.org/W2110436410","https://openalex.org/W2112945902","https://openalex.org/W2113422929","https://openalex.org/W2126606094","https://openalex.org/W2138758959","https://openalex.org/W2139939149","https://openalex.org/W2143784594","https://openalex.org/W2145600675","https://openalex.org/W2163480486","https://openalex.org/W2164085997","https://openalex.org/W2528271650","https://openalex.org/W2635107621"],"related_works":["https://openalex.org/W2770764537","https://openalex.org/W2130939068","https://openalex.org/W3163717165","https://openalex.org/W2114466827","https://openalex.org/W2129949791","https://openalex.org/W2791736663","https://openalex.org/W2806770614","https://openalex.org/W2131550814","https://openalex.org/W1710460698","https://openalex.org/W249159571"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,18],"propose":[4],"an":[5,20],"original":[6],"computational":[7],"approach":[8],"to":[9,33],"assist":[10],"knowledge":[11],"discovery":[12],"in":[13],"complex":[14],"biological":[15],"networks.":[16],"First,":[17],"present":[19],"integrated":[21],"model":[22],"of":[23,26],"the":[24],"evolution":[25],"regulation":[27],"networks":[28],"that":[29],"can":[30],"be":[31],"used":[32],"uncover":[34],"organization":[35],"principl":[36]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
