{"id":"https://openalex.org/W2743740345","doi":"https://doi.org/10.3233/fi-2017-1563","title":"Patterns and Distances in Words Related to DNA Rearrangement","display_name":"Patterns and Distances in Words Related to DNA Rearrangement","publication_year":2017,"publication_date":"2017-08-09","ids":{"openalex":"https://openalex.org/W2743740345","doi":"https://doi.org/10.3233/fi-2017-1563","mag":"2743740345"},"language":"en","primary_location":{"id":"doi:10.3233/fi-2017-1563","is_oa":false,"landing_page_url":"https://doi.org/10.3233/fi-2017-1563","pdf_url":null,"source":{"id":"https://openalex.org/S39012697","display_name":"Fundamenta Informaticae","issn_l":"0169-2968","issn":["0169-2968","1875-8681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fundamenta Informaticae","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083450874","display_name":"Nata\u0161a Jonoska","orcid":null},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nata\u0161a Jonoska","raw_affiliation_strings":["University of South Florida, Tampa FL, 33620 USA. jonoska@mail.usf.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of South Florida, Tampa FL, 33620 USA. jonoska@mail.usf.edu","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023317979","display_name":"Lukas Nabergall","orcid":null},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lukas Nabergall","raw_affiliation_strings":["University of South Florida, Tampa FL, 33620 USA. lnabergall@mail.usf.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of South Florida, Tampa FL, 33620 USA. lnabergall@mail.usf.edu","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017175550","display_name":"Masahico Saito","orcid":"https://orcid.org/0000-0003-0795-8548"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Masahico Saito","raw_affiliation_strings":["University of South Florida, Tampa FL, 33620 USA. saito@usf.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of South Florida, Tampa FL, 33620 USA. saito@usf.edu","institution_ids":["https://openalex.org/I2613432"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5083450874"],"corresponding_institution_ids":["https://openalex.org/I2613432"],"apc_list":null,"apc_paid":null,"fwci":0.5599,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.66556639,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"154","issue":"1-4","first_page":"225","last_page":"238"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.7676088809967041},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.5818192362785339},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5463840961456299},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.513531506061554},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.5115860104560852},{"id":"https://openalex.org/keywords/symbol","display_name":"Symbol (formal)","score":0.42199933528900146},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.24646568298339844}],"concepts":[{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.7676088809967041},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.5818192362785339},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5463840961456299},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.513531506061554},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.5115860104560852},{"id":"https://openalex.org/C134400042","wikidata":"https://www.wikidata.org/wiki/Q2372244","display_name":"Symbol (formal)","level":2,"score":0.42199933528900146},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.24646568298339844},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/fi-2017-1563","is_oa":false,"landing_page_url":"https://doi.org/10.3233/fi-2017-1563","pdf_url":null,"source":{"id":"https://openalex.org/S39012697","display_name":"Fundamenta Informaticae","issn_l":"0169-2968","issn":["0169-2968","1875-8681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fundamenta Informaticae","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W3242420","https://openalex.org/W9273873","https://openalex.org/W191758795","https://openalex.org/W201318262","https://openalex.org/W1501400124","https://openalex.org/W1965415591","https://openalex.org/W1969669269","https://openalex.org/W1973184666","https://openalex.org/W1982787058","https://openalex.org/W1985108724","https://openalex.org/W1987592666","https://openalex.org/W1989204408","https://openalex.org/W2017131087","https://openalex.org/W2025237878","https://openalex.org/W2026024229","https://openalex.org/W2039659422","https://openalex.org/W2074231493","https://openalex.org/W2080175276","https://openalex.org/W2086965829","https://openalex.org/W2166265158","https://openalex.org/W2244603524","https://openalex.org/W2512483834","https://openalex.org/W2765979648"],"related_works":["https://openalex.org/W2389793738","https://openalex.org/W2376208682","https://openalex.org/W4246219814","https://openalex.org/W2368886944","https://openalex.org/W4240806619","https://openalex.org/W4254609622","https://openalex.org/W2611966483","https://openalex.org/W2392641092","https://openalex.org/W4249220032","https://openalex.org/W35916502"],"abstract_inverted_index":{"We":[0,46,128],"initiate":[1],"studies":[2],"of":[3,14,21,61,71,134],"patterns":[4,82,102,118],"in":[5,30,43,84,103,110,138],"words":[6,55,94,113],"that":[7,26,74,109],"appear":[8],"as":[9,67],"subwords":[10],"(not":[11],"necessarily":[12],"factors)":[13],"words.":[15,105],"A":[16],"pattern":[17,28,48,132],"is":[18,65,126],"a":[19,27,31,41,58],"string":[20],"variables,":[22],"and":[23,50,101,122],"we":[24,89,107],"say":[25],"appears":[29,99],"word":[32,77],"if":[33],"each":[34],"variable":[35],"can":[36],"be":[37],"morphically":[38],"mapped":[39],"to":[40,57,117,142],"factor":[42],"the":[44,68,114],"word.":[45],"define":[47],"indices":[49,133],"distances":[51],"between":[52],"tw":[53],"o":[54],"relative":[56,116,141],"given":[59],"set":[60],"patterns.":[62],"The":[63],"distance":[64,115],"defined":[66],"minimal":[69],"number":[70],"\u2018pattern":[72],"reductions\u2019":[73],"transfer":[75],"one":[76],"into":[78],"another.":[79],"Motivated":[80],"by":[81],"detected":[83],"certain":[85],"scrambled":[86,136],"ciliate":[87],"genomes,":[88],"focus":[90],"on":[91],"double":[92,111],"occurrence":[93,112],"(words":[95],"where":[96],"every":[97],"symbol":[98],"twice)":[100],"those":[104],"Specifically,":[106],"show":[108],"\u03b1\u03b1":[119],"(repeat":[120],"words)":[121,125],"\u03b1\u03b1R":[123],"(return":[124],"computable.":[127],"also":[129],"compare":[130],"some":[131],"highly":[135],"genes":[137],"O.":[139],"trifallax":[140],"random":[143],"sequences.":[144]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1}],"updated_date":"2026-05-02T06:04:40.494371","created_date":"2025-10-10T00:00:00"}
