{"id":"https://openalex.org/W2134545644","doi":"https://doi.org/10.3233/fi-2010-316","title":"A Formalism for the Description of Protein Interaction Dedicated to Jerzy Tiuryn on the Occasion of his 60th Birthday","display_name":"A Formalism for the Description of Protein Interaction Dedicated to Jerzy Tiuryn on the Occasion of his 60th Birthday","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2134545644","doi":"https://doi.org/10.3233/fi-2010-316","mag":"2134545644"},"language":"en","primary_location":{"id":"doi:10.3233/fi-2010-316","is_oa":false,"landing_page_url":"https://doi.org/10.3233/fi-2010-316","pdf_url":null,"source":{"id":"https://openalex.org/S39012697","display_name":"Fundamenta Informaticae","issn_l":"0169-2968","issn":["0169-2968","1875-8681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fundamenta Informaticae","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089634233","display_name":"Roberto Barbuti","orcid":"https://orcid.org/0000-0001-7028-4238"},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Roberto Barbuti","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo Bruno Pontecorvo 3, 56127 Pisa, Italy. barbuti@di.unipi.it;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo Bruno Pontecorvo 3, 56127 Pisa, Italy. barbuti@di.unipi.it;","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111495699","display_name":"Andrea Maggiolo\u2013Schettini","orcid":null},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Maggiolo-Schettini","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo Bruno Pontecorvo 3, 56127 Pisa, Italy. maggiolo@di.unipi.it"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo Bruno Pontecorvo 3, 56127 Pisa, Italy. maggiolo@di.unipi.it","institution_ids":["https://openalex.org/I108290504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047668180","display_name":"Angelo Troina","orcid":"https://orcid.org/0000-0002-0049-4237"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Angelo Troina","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Torino, Corso Svizzera 185, 10149 Torino, Italy. troina@di.unito.it"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Torino, Corso Svizzera 185, 10149 Torino, Italy. troina@di.unito.it","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053585862","display_name":"Mariangiola Dezani-Ciancaglini","orcid":"https://orcid.org/0000-0002-3341-0941"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mariangiola Dezani-Ciancaglini","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Torino, Corso Svizzera 185, 10149 Torino, Italy. dezani@di.unito.it"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Torino, Corso Svizzera 185, 10149 Torino, Italy. dezani@di.unito.it","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038730637","display_name":"Paolo Milazzo","orcid":"https://orcid.org/0000-0002-7309-6424"},"institutions":[{"id":"https://openalex.org/I108290504","display_name":"University of Pisa","ror":"https://ror.org/03ad39j10","country_code":"IT","type":"education","lineage":["https://openalex.org/I108290504"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Milazzo","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo Bruno Pontecorvo 3, 56127 Pisa, Italy. milazzo@di.unipi.it"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 di Pisa, Largo Bruno Pontecorvo 3, 56127 Pisa, Italy. milazzo@di.unipi.it","institution_ids":["https://openalex.org/I108290504"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.5905,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.83514533,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"103","issue":"1-4","first_page":"1","last_page":"29"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11445","display_name":"Origins and Evolution of Life","score":0.9659000039100647,"subfield":{"id":"https://openalex.org/subfields/3103","display_name":"Astronomy and Astrophysics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11445","display_name":"Origins and Evolution of Life","score":0.9659000039100647,"subfield":{"id":"https://openalex.org/subfields/3103","display_name":"Astronomy and Astrophysics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9330999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9100000262260437,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.8318612575531006},{"id":"https://openalex.org/keywords/rewriting","display_name":"Rewriting","score":0.7432060241699219},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4984245300292969},{"id":"https://openalex.org/keywords/calculus","display_name":"Calculus (dental)","score":0.46613094210624695},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.35315364599227905},{"id":"https://openalex.org/keywords/algebra-over-a-field","display_name":"Algebra over a field","score":0.35235172510147095},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34220391511917114},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.2192346751689911},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18975281715393066},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.07047262787818909},{"id":"https://openalex.org/keywords/literature","display_name":"Literature","score":0.05906766653060913},{"id":"https://openalex.org/keywords/art","display_name":"Art","score":0.05792918801307678}],"concepts":[{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.8318612575531006},{"id":"https://openalex.org/C154690210","wikidata":"https://www.wikidata.org/wiki/Q1668499","display_name":"Rewriting","level":2,"score":0.7432060241699219},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4984245300292969},{"id":"https://openalex.org/C2777686260","wikidata":"https://www.wikidata.org/wiki/Q144037","display_name":"Calculus (dental)","level":2,"score":0.46613094210624695},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.35315364599227905},{"id":"https://openalex.org/C136119220","wikidata":"https://www.wikidata.org/wiki/Q1000660","display_name":"Algebra over a field","level":2,"score":0.35235172510147095},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34220391511917114},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.2192346751689911},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18975281715393066},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.07047262787818909},{"id":"https://openalex.org/C124952713","wikidata":"https://www.wikidata.org/wiki/Q8242","display_name":"Literature","level":1,"score":0.05906766653060913},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.05792918801307678},{"id":"https://openalex.org/C199343813","wikidata":"https://www.wikidata.org/wiki/Q12128","display_name":"Dentistry","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3233/fi-2010-316","is_oa":false,"landing_page_url":"https://doi.org/10.3233/fi-2010-316","pdf_url":null,"source":{"id":"https://openalex.org/S39012697","display_name":"Fundamenta Informaticae","issn_l":"0169-2968","issn":["0169-2968","1875-8681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fundamenta Informaticae","raw_type":"journal-article"},{"id":"pmh:oai:arpi.unipi.it:11568/140560","is_oa":false,"landing_page_url":"http://hdl.handle.net/11568/140560","pdf_url":null,"source":{"id":"https://openalex.org/S4377196265","display_name":"CINECA IRIS Institutial research information system (University of Pisa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I108290504","host_organization_name":"University of Pisa","host_organization_lineage":["https://openalex.org/I108290504"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W291482096","https://openalex.org/W1487906584","https://openalex.org/W1535220465","https://openalex.org/W1537348057","https://openalex.org/W1572091553","https://openalex.org/W1573394606","https://openalex.org/W1934319200","https://openalex.org/W1975954590","https://openalex.org/W1979697722","https://openalex.org/W1986649132","https://openalex.org/W2040270674","https://openalex.org/W2074916974","https://openalex.org/W2106190666","https://openalex.org/W2113997157","https://openalex.org/W2122529434","https://openalex.org/W2125202325","https://openalex.org/W2169062290","https://openalex.org/W2913004508","https://openalex.org/W3143469549","https://openalex.org/W3151002326"],"related_works":["https://openalex.org/W2120204135","https://openalex.org/W2139396251","https://openalex.org/W1796293478","https://openalex.org/W1577544887","https://openalex.org/W2168276503","https://openalex.org/W1573537275","https://openalex.org/W2105713543","https://openalex.org/W174435416","https://openalex.org/W2132239740","https://openalex.org/W3204937561"],"abstract_inverted_index":{"The":[0],"Calculus":[1],"of":[2,11,16,29],"Looping":[3],"Sequences":[4],"is":[5],"a":[6],"formalism":[7],"for":[8],"describing":[9],"evolution":[10],"biological":[12],"systems":[13],"by":[14,26],"means":[15],"term":[17],"rewriting":[18],"rules.":[19],"We":[20],"propose":[21],"to":[22],"enrich":[23],"this":[24],"calculus":[25],"labelling":[27],"elements":[28,33],"sequences.":[30],"Since":[31],"two":[32],"with":[34],"the":[35],"same":[36],"label":[37],"are":[38],"consid":[39]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
