{"id":"https://openalex.org/W4415428667","doi":"https://doi.org/10.3233/faia250903","title":"Deep Learning and Explainable AI: New Pathways to Genetic Insights","display_name":"Deep Learning and Explainable AI: New Pathways to Genetic Insights","publication_year":2025,"publication_date":"2025-10-21","ids":{"openalex":"https://openalex.org/W4415428667","doi":"https://doi.org/10.3233/faia250903"},"language":null,"primary_location":{"id":"doi:10.3233/faia250903","is_oa":true,"landing_page_url":"https://doi.org/10.3233/faia250903","pdf_url":null,"source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.3233/faia250903","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100385862","display_name":"Chenyu Wang","orcid":"https://orcid.org/0000-0001-7135-7662"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I74525822","display_name":"Hubei University of Technology","ror":"https://ror.org/02d3fj342","country_code":"CN","type":"education","lineage":["https://openalex.org/I74525822"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chenyu Wang","raw_affiliation_strings":["Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China","institution_ids":["https://openalex.org/I74525822"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070, Hubei, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Chaoying Zuo","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I74525822","display_name":"Hubei University of Technology","ror":"https://ror.org/02d3fj342","country_code":"CN","type":"education","lineage":["https://openalex.org/I74525822"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chaoying Zuo","raw_affiliation_strings":["Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China","institution_ids":["https://openalex.org/I74525822"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070, Hubei, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104623240","display_name":"Zihan Su","orcid":"https://orcid.org/0009-0008-3660-358X"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I74525822","display_name":"Hubei University of Technology","ror":"https://ror.org/02d3fj342","country_code":"CN","type":"education","lineage":["https://openalex.org/I74525822"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zihan Su","raw_affiliation_strings":["Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China","institution_ids":["https://openalex.org/I74525822"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070, Hubei, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112549484","display_name":"Yuhang Xing","orcid":"https://orcid.org/0000-0003-0445-9049"},"institutions":[{"id":"https://openalex.org/I102208913","display_name":"Shihezi University","ror":"https://ror.org/04x0kvm78","country_code":"CN","type":"education","lineage":["https://openalex.org/I102208913"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuhang Xing","raw_affiliation_strings":["Agricultural College, Shihezi University, 832002, Xinjiang, China"],"affiliations":[{"raw_affiliation_string":"Agricultural College, Shihezi University, 832002, Xinjiang, China","institution_ids":["https://openalex.org/I102208913"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100386287","display_name":"Lu Li","orcid":"https://orcid.org/0000-0001-5159-0045"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I74525822","display_name":"Hubei University of Technology","ror":"https://ror.org/02d3fj342","country_code":"CN","type":"education","lineage":["https://openalex.org/I74525822"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lu Li","raw_affiliation_strings":["Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China","institution_ids":["https://openalex.org/I74525822"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070, Hubei, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013257553","display_name":"Maojun Wang","orcid":"https://orcid.org/0000-0002-4791-3742"},"institutions":[{"id":"https://openalex.org/I74525822","display_name":"Hubei University of Technology","ror":"https://ror.org/02d3fj342","country_code":"CN","type":"education","lineage":["https://openalex.org/I74525822"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Maojun Wang","raw_affiliation_strings":["Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China","institution_ids":["https://openalex.org/I74525822"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100358752","display_name":"Zeyu Zhang","orcid":"https://orcid.org/0000-0003-3376-7817"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I74525822","display_name":"Hubei University of Technology","ror":"https://ror.org/02d3fj342","country_code":"CN","type":"education","lineage":["https://openalex.org/I74525822"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zeyu Zhang","raw_affiliation_strings":["Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China","National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Intelligent Technology for Agriculture, Ministry of Education, Wuhan, 430070, Hubei, China","institution_ids":["https://openalex.org/I74525822"]},{"raw_affiliation_string":"National Key Laboratory of Crop Genetic Improvement, Hubei Hongshan Laboratory, Huazhong Agricultural University, 430070, Hubei, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100385862"],"corresponding_institution_ids":["https://openalex.org/I204823248","https://openalex.org/I74525822"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.49134958,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.461899995803833,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.461899995803833,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.9695000052452087},{"id":"https://openalex.org/keywords/intuition","display_name":"Intuition","score":0.6366999745368958},{"id":"https://openalex.org/keywords/categorization","display_name":"Categorization","score":0.5525000095367432},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4772000014781952},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4214000105857849},{"id":"https://openalex.org/keywords/trustworthiness","display_name":"Trustworthiness","score":0.42010000348091125}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.9695000052452087},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6428999900817871},{"id":"https://openalex.org/C132010649","wikidata":"https://www.wikidata.org/wiki/Q189222","display_name":"Intuition","level":2,"score":0.6366999745368958},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.588699996471405},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.5525000095367432},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4772000014781952},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.450300008058548},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4214000105857849},{"id":"https://openalex.org/C153701036","wikidata":"https://www.wikidata.org/wiki/Q659974","display_name":"Trustworthiness","level":2,"score":0.42010000348091125},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3959999978542328},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.392300009727478},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.3068999946117401},{"id":"https://openalex.org/C2993807623","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genetic data","level":3,"score":0.30149999260902405},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.2928999960422516},{"id":"https://openalex.org/C2776291640","wikidata":"https://www.wikidata.org/wiki/Q2912517","display_name":"Value (mathematics)","level":2,"score":0.2718999981880188},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.2676999866962433},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.25859999656677246}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/faia250903","is_oa":true,"landing_page_url":"https://doi.org/10.3233/faia250903","pdf_url":null,"source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.3233/faia250903","is_oa":true,"landing_page_url":"https://doi.org/10.3233/faia250903","pdf_url":null,"source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Deep":[0],"learning-based":[1],"AI":[2],"models":[3,18,43,119],"have":[4],"been":[5],"extensively":[6],"applied":[7],"in":[8,32,47,58,114,120,133],"genomics,":[9],"achieving":[10],"remarkable":[11],"success":[12],"across":[13],"diverse":[14],"applications.":[15],"As":[16],"these":[17,42,103],"gain":[19],"prominence,":[20],"there":[21],"exists":[22],"an":[23],"urgent":[24],"need":[25],"for":[26,51,128],"interpretability":[27,56,76,132],"methods":[28,77],"to":[29,98,110],"establish":[30,95],"trustworthiness":[31],"model-driven":[33],"decisions.":[34],"For":[35],"genetic":[36,112],"researchers,":[37],"interpretable":[38],"insights":[39],"derived":[40],"from":[41],"hold":[44],"significant":[45],"value":[46],"providing":[48],"novel":[49],"perspectives":[50],"understanding":[52,116],"biological":[53,90],"processes.":[54],"Current":[55],"analyses":[57],"genomics":[59],"predominantly":[60],"rely":[61],"on":[62,131],"intuition":[63],"and":[64,80,117],"experience":[65],"rather":[66],"than":[67],"rigorous":[68],"theoretical":[69,96],"foundations.":[70],"In":[71],"this":[72],"review,":[73],"we":[74,94,124],"categorize":[75],"into":[78],"input-based":[79],"model-based":[81],"approaches,":[82],"while":[83],"critically":[84],"evaluating":[85],"their":[86],"limitations":[87],"through":[88,105],"concrete":[89],"application":[91],"scenarios.":[92],"Furthermore,":[93],"underpinnings":[97],"elucidate":[99],"the":[100,121,134],"origins":[101],"of":[102,136],"constraints":[104],"formal":[106],"mathematical":[107],"demonstrations,":[108],"aiming":[109],"assist":[111],"researchers":[113],"better":[115],"designing":[118],"future.":[122],"Finally,":[123],"provide":[125],"feasible":[126],"suggestions":[127],"future":[129],"research":[130],"field":[135],"genetics.":[137]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-24T00:00:00"}
