{"id":"https://openalex.org/W4403486686","doi":"https://doi.org/10.3233/faia240995","title":"Cost Partitioning for Multiple Sequence Alignment","display_name":"Cost Partitioning for Multiple Sequence Alignment","publication_year":2024,"publication_date":"2024-10-16","ids":{"openalex":"https://openalex.org/W4403486686","doi":"https://doi.org/10.3233/faia240995"},"language":"en","primary_location":{"id":"doi:10.3233/faia240995","is_oa":true,"landing_page_url":"https://doi.org/10.3233/faia240995","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA240995","source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA240995","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114301639","display_name":"Mika Skjelnes","orcid":null},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Mika Skjelnes","raw_affiliation_strings":["Link\u00f6ping University, Sweden, firstname.lastname@liu.se"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Link\u00f6ping University, Sweden, firstname.lastname@liu.se","institution_ids":["https://openalex.org/I102134673"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088566339","display_name":"Daniel Gnad","orcid":"https://orcid.org/0000-0001-7434-2669"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Daniel Gnad","raw_affiliation_strings":["Link\u00f6ping University, Sweden, firstname.lastname@liu.se"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Link\u00f6ping University, Sweden, firstname.lastname@liu.se","institution_ids":["https://openalex.org/I102134673"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031089257","display_name":"Jendrik Seipp","orcid":"https://orcid.org/0000-0002-2498-8020"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Jendrik Seipp","raw_affiliation_strings":["Link\u00f6ping University, Sweden, firstname.lastname@liu.se"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Link\u00f6ping University, Sweden, firstname.lastname@liu.se","institution_ids":["https://openalex.org/I102134673"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.47299188,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11159","display_name":"Manufacturing Process and Optimization","score":0.9596999883651733,"subfield":{"id":"https://openalex.org/subfields/2209","display_name":"Industrial and Manufacturing Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11159","display_name":"Manufacturing Process and Optimization","score":0.9596999883651733,"subfield":{"id":"https://openalex.org/subfields/2209","display_name":"Industrial and Manufacturing Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6494448781013489},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4612817168235779},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13243836164474487},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08204346895217896}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6494448781013489},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4612817168235779},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13243836164474487},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08204346895217896}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/faia240995","is_oa":true,"landing_page_url":"https://doi.org/10.3233/faia240995","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA240995","source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.3233/faia240995","is_oa":true,"landing_page_url":"https://doi.org/10.3233/faia240995","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA240995","source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities","score":0.7400000095367432}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4403486686.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Multiple":[0],"Sequence":[1],"Alignment":[2],"(MSA)":[3],"is":[4,12,58],"a":[5,48,126,134],"fundamental":[6],"problem":[7],"in":[8],"computational":[9],"biology":[10],"that":[11,107,118,141],"used":[13],"to":[14,46,54,90,151],"understand":[15],"the":[16,68,78,85,101,108,142,147],"evolutionary":[17],"history":[18],"of":[19,67,80,130,136],"protein,":[20],"DNA,":[21],"or":[22],"RNA":[23],"sequences.":[24,70],"An":[25],"optimal":[26,40],"alignment":[27],"for":[28,42,88],"two":[29,97],"sequences":[30,44,132],"can":[31],"efficiently":[32],"be":[33,47],"found":[34],"using":[35],"dynamic":[36],"programming,":[37],"but":[38],"computing":[39],"alignments":[41],"more":[43],"continues":[45],"hard":[49],"problem.":[50],"A":[51],"common":[52,127],"method":[53],"solve":[55],"MSA":[56,76,89,109],"problems":[57],"A*":[59],"search":[60],"with":[61],"admissible":[62],"heuristics,":[63],"computed":[64],"from":[65,77,100],"subsets":[66],"input":[69],"In":[71],"this":[72],"paper,":[73],"we":[74,139],"consider":[75],"perspective":[79],"cost":[81,92,115],"partitioning":[82,93,116],"and":[83,94,117,133],"relate":[84],"existing":[86],"heuristics":[87,110,148],"uniform":[91,114],"post-hoc":[95,119],"optimization,":[96],"well-known":[98],"techniques":[99],"automated":[102],"planning":[103],"literature.":[104],"We":[105],"show":[106,140],"are":[111],"bounded":[112],"by":[113],"optimization":[120],"yields":[121],"strictly":[122],"dominating":[123],"heuristics.":[124],"For":[125],"benchmark":[128],"set":[129,135],"protein":[131],"DNA":[137],"sequences,":[138],"theoretical":[143],"dominance":[144],"relations":[145],"between":[146],"carry":[149],"over":[150],"practical":[152],"instances.":[153]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
