{"id":"https://openalex.org/W4403488004","doi":"https://doi.org/10.3233/faia240615","title":"Bridging the Gap: Generating a Comprehensive Biomedical Knowledge Graph Question Answering Dataset","display_name":"Bridging the Gap: Generating a Comprehensive Biomedical Knowledge Graph Question Answering Dataset","publication_year":2024,"publication_date":"2024-10-16","ids":{"openalex":"https://openalex.org/W4403488004","doi":"https://doi.org/10.3233/faia240615"},"language":"en","primary_location":{"id":"doi:10.3233/faia240615","is_oa":true,"landing_page_url":"https://doi.org/10.3233/faia240615","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA240615","source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA240615","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012878155","display_name":"Yan Xi","orcid":"https://orcid.org/0000-0002-1829-6554"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Xi Yan","raw_affiliation_strings":["Universit\u00e4t Hamburg"],"raw_orcid":"https://orcid.org/0000-0002-1829-6554","affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031433144","display_name":"Patrick Westphal","orcid":"https://orcid.org/0000-0002-3855-4485"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Patrick Westphal","raw_affiliation_strings":["Universit\u00e4t Hamburg"],"raw_orcid":"https://orcid.org/0000-0002-3855-4485","affiliations":[{"raw_affiliation_string":"Universit\u00e4t Hamburg","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081841062","display_name":"Jan Moritz Seliger","orcid":"https://orcid.org/0000-0003-1337-2850"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I4210108711","display_name":"University Medical Center Hamburg-Eppendorf","ror":"https://ror.org/01zgy1s35","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan Seliger","raw_affiliation_strings":["Universit\u00e4tsklinikum Hamburg-Eppendorf"],"raw_orcid":"https://orcid.org/0000-0003-1337-2850","affiliations":[{"raw_affiliation_string":"Universit\u00e4tsklinikum Hamburg-Eppendorf","institution_ids":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069462779","display_name":"Ricardo Usbeck","orcid":"https://orcid.org/0000-0002-0191-7211"},"institutions":[{"id":"https://openalex.org/I113456305","display_name":"Leuphana University of L\u00fcneburg","ror":"https://ror.org/02w2y2t16","country_code":"DE","type":"education","lineage":["https://openalex.org/I113456305"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ricardo Usbeck","raw_affiliation_strings":["Leuphana Universit\u00e4t L\u00fcneburg"],"raw_orcid":"https://orcid.org/0000-0002-0191-7211","affiliations":[{"raw_affiliation_string":"Leuphana Universit\u00e4t L\u00fcneburg","institution_ids":["https://openalex.org/I113456305"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.6498,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.92110542,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.8991000056266785,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.8991000056266785,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.858299970626831,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bridging","display_name":"Bridging (networking)","score":0.9517652988433838},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.5919333100318909},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5258373022079468},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.4731612801551819},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.40012431144714355},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35322797298431396}],"concepts":[{"id":"https://openalex.org/C174348530","wikidata":"https://www.wikidata.org/wiki/Q188635","display_name":"Bridging (networking)","level":2,"score":0.9517652988433838},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.5919333100318909},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5258373022079468},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.4731612801551819},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.40012431144714355},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35322797298431396},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3233/faia240615","is_oa":true,"landing_page_url":"https://doi.org/10.3233/faia240615","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA240615","source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},{"id":"pmh:oai:pure.leuphana.de:openaire/41d62101-5110-41df-813a-c0c8f77d9b15","is_oa":false,"landing_page_url":"http://fis.leuphana.de/de/publications/bridging-the-gap-generating-a-comprehensive-biomedical-knowledge-graph-question-answering-dataset(41d62101-5110-41df-813a-c0c8f77d9b15).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400489","display_name":"Multilingual Matters (Channel View Publications)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.leuphana.de:publications/41d62101-5110-41df-813a-c0c8f77d9b15","is_oa":false,"landing_page_url":"http://fox.leuphana.de/portal/de/publications/bridging-the-gap-generating-a-comprehensive-biomedical-knowledge-graph-question-answering-dataset(41d62101-5110-41df-813a-c0c8f77d9b15).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400489","display_name":"Multilingual Matters (Channel View Publications)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.3233/faia240615","is_oa":true,"landing_page_url":"https://doi.org/10.3233/faia240615","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA240615","source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.7200000286102295,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403488004.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4388870064","https://openalex.org/W2384605597","https://openalex.org/W2210139803","https://openalex.org/W4235186151","https://openalex.org/W2054685365","https://openalex.org/W2056057048","https://openalex.org/W2667588871","https://openalex.org/W2272354214","https://openalex.org/W4401140950","https://openalex.org/W4400650325"],"abstract_inverted_index":{"Despite":[0],"the":[1,15,53,113,120],"plethora":[2],"of":[3,77,85,90,119],"resources":[4],"such":[5],"as":[6,135],"large-scale":[7],"corpora":[8],"and":[9,88,116,145],"manually":[10],"curated":[11],"Knowledge":[12,44],"Graphs":[13],"(KGs),":[14],"ability":[16],"to":[17,30,111],"perform":[18],"reasoning":[19],"with":[20,66],"natural":[21],"language":[22],"inputs":[23],"over":[24],"biomedical":[25,86,143],"graphs":[26],"remains":[27],"challenging":[28],"due":[29],"insufficient":[31],"training":[32],"data.":[33],"We":[34,92,103],"propose":[35],"a":[36,42,74,82,136],"novel":[37,105],"method":[38,95],"for":[39,108,140],"automatically":[40],"constructing":[41],"Biomedical":[43],"Graph":[45],"Question":[46],"Answering":[47],"(BioKGQA)":[48],"dataset":[49,130],"sourced":[50],"from":[51],"PrimeKG,":[52],"largest":[54],"precision":[55],"medicine-oriented":[56],"KG.":[57],"In":[58],"total,":[59],"we":[60],"create":[61],"85,368":[62],"question-answer":[63],"pairs":[64],"along":[65],"their":[67],"respective":[68],"SPARQL":[69],"queries.":[70],"Our":[71],"approach":[72],"generates":[73],"diverse":[75],"array":[76],"contextually":[78],"relevant":[79],"questions":[80,122],"covering":[81],"wide":[83],"spectrum":[84],"concepts":[87],"levels":[89],"complexity.":[91],"evaluate":[93],"our":[94],"based":[96,123],"on":[97,124],"automatic":[98],"metrics":[99],"alongside":[100],"manual":[101],"annotations.":[102],"establish":[104],"standards":[106],"tailored":[107],"KGQA":[109,147],"systems":[110],"highlight":[112],"linguistic":[114],"correctness":[115],"semantical":[117],"faithfulness":[118],"generated":[121],"extracted":[125],"KG":[126],"facts.":[127],"The":[128],"compiled":[129],"\u2013":[131,133],"PrimeKGQA":[132],"serves":[134],"valuable":[137],"benchmarking":[138],"resource":[139],"advancing":[141],"knowledge-driven":[142],"research":[144],"evaluating":[146],"systems.":[148]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-19T07:52:34.831488","created_date":"2025-10-10T00:00:00"}
