{"id":"https://openalex.org/W4387185398","doi":"https://doi.org/10.3233/faia230481","title":"Active Finetuning Protein Language Model: A Budget-Friendly Method for Directed Evolution","display_name":"Active Finetuning Protein Language Model: A Budget-Friendly Method for Directed Evolution","publication_year":2023,"publication_date":"2023-09-28","ids":{"openalex":"https://openalex.org/W4387185398","doi":"https://doi.org/10.3233/faia230481"},"language":"en","primary_location":{"id":"doi:10.3233/faia230481","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/faia230481","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA230481","source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA230481","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054995764","display_name":"Ming Qin","orcid":"https://orcid.org/0000-0002-8424-6299"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ming Qin","raw_affiliation_strings":["AZFT Joint Lab for Knowledge Engine","ZJU-Hangzhou Global Scientific and Technological Innovation Center","Zhejiang University","AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine","institution_ids":[]},{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Zhejiang University","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab","institution_ids":["https://openalex.org/I4210165038","https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032086683","display_name":"Keyan Ding","orcid":"https://orcid.org/0000-0003-2900-7313"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Keyan Ding","raw_affiliation_strings":["AZFT Joint Lab for Knowledge Engine","ZJU-Hangzhou Global Scientific and Technological Innovation Center","Zhejiang University","AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine","institution_ids":[]},{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Zhejiang University","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab","institution_ids":["https://openalex.org/I4210165038","https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101892788","display_name":"Bin Wu","orcid":"https://orcid.org/0000-0002-8677-2321"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Wu","raw_affiliation_strings":["ZJU-Hangzhou Global Scientific and Technological Innovation Center","Zhejiang University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Zhejiang University","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065104736","display_name":"Zhenping Li","orcid":"https://orcid.org/0000-0001-8590-8517"},"institutions":[{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenping Li","raw_affiliation_strings":["University of Chinese Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Chinese Academy of Sciences","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113093546","display_name":"Haihong Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haihong Yang","raw_affiliation_strings":["AZFT Joint Lab for Knowledge Engine","ZJU-Hangzhou Global Scientific and Technological Innovation Center","Zhejiang University","AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine","institution_ids":[]},{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Zhejiang University","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab","institution_ids":["https://openalex.org/I4210165038","https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100729939","display_name":"Zeyuan Wang","orcid":"https://orcid.org/0000-0001-7211-9543"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zeyuan Wang","raw_affiliation_strings":["AZFT Joint Lab for Knowledge Engine","ZJU-Hangzhou Global Scientific and Technological Innovation Center","Zhejiang University","AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine","institution_ids":[]},{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Zhejiang University","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab","institution_ids":["https://openalex.org/I4210165038","https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058342791","display_name":"Hongbin Ye","orcid":"https://orcid.org/0000-0001-5727-5599"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongbin Ye","raw_affiliation_strings":["Zhejiang Lab","Zhejiang University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zhejiang Lab","institution_ids":["https://openalex.org/I4210123185"]},{"raw_affiliation_string":"Zhejiang University","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034832098","display_name":"Haoran Yu","orcid":"https://orcid.org/0000-0001-9012-4688"},"institutions":[{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoran Yu","raw_affiliation_strings":["AZFT Joint Lab for Knowledge Engine","Zhejiang University","AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine","institution_ids":[]},{"raw_affiliation_string":"Zhejiang University","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab","institution_ids":["https://openalex.org/I4210165038","https://openalex.org/I4210123185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102018239","display_name":"Huajun Chen","orcid":"https://orcid.org/0000-0001-5496-7442"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huajun Chen","raw_affiliation_strings":["AZFT Joint Lab for Knowledge Engine","ZJU-Hangzhou Global Scientific and Technological Innovation Center","Zhejiang University","AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine","institution_ids":[]},{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Zhejiang University","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab","institution_ids":["https://openalex.org/I4210165038","https://openalex.org/I4210123185"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100381976","display_name":"Qiang Zhang","orcid":"https://orcid.org/0000-0003-0876-4374"},"institutions":[{"id":"https://openalex.org/I168879160","display_name":"Zhejiang University of Science and Technology","ror":"https://ror.org/05mx0wr29","country_code":"CN","type":"education","lineage":["https://openalex.org/I168879160"]},{"id":"https://openalex.org/I4210123185","display_name":"Zhejiang Lab","ror":"https://ror.org/02m2h7991","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210123185"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]},{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Zhang","raw_affiliation_strings":["AZFT Joint Lab for Knowledge Engine","ZJU-Hangzhou Global Scientific and Technological Innovation Center","Zhejiang University","AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine","institution_ids":[]},{"raw_affiliation_string":"ZJU-Hangzhou Global Scientific and Technological Innovation Center","institution_ids":["https://openalex.org/I168879160"]},{"raw_affiliation_string":"Zhejiang University","institution_ids":["https://openalex.org/I76130692"]},{"raw_affiliation_string":"AZFT Joint Lab for Knowledge Engine d University of Chinese Academy of Sciences e Zhejiang Lab","institution_ids":["https://openalex.org/I4210165038","https://openalex.org/I4210123185"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5054995764"],"corresponding_institution_ids":["https://openalex.org/I168879160","https://openalex.org/I4210123185","https://openalex.org/I4210165038","https://openalex.org/I76130692"],"apc_list":null,"apc_paid":null,"fwci":2.1717,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.88783257,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9868999719619751,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7685289978981018},{"id":"https://openalex.org/keywords/directed-evolution","display_name":"Directed evolution","score":0.7484577298164368},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5466941595077515},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5355486869812012},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.46503159403800964},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.44536250829696655},{"id":"https://openalex.org/keywords/protein-engineering","display_name":"Protein engineering","score":0.4412323534488678},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.41923969984054565},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.37197864055633545},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11340859532356262},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10724309086799622},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10646075010299683},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08876878023147583}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7685289978981018},{"id":"https://openalex.org/C9418097","wikidata":"https://www.wikidata.org/wiki/Q440681","display_name":"Directed evolution","level":4,"score":0.7484577298164368},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5466941595077515},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5355486869812012},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.46503159403800964},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.44536250829696655},{"id":"https://openalex.org/C147816474","wikidata":"https://www.wikidata.org/wiki/Q169525","display_name":"Protein engineering","level":3,"score":0.4412323534488678},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.41923969984054565},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.37197864055633545},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11340859532356262},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10724309086799622},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10646075010299683},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08876878023147583},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/faia230481","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/faia230481","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA230481","source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"}],"best_oa_location":{"id":"doi:10.3233/faia230481","is_oa":true,"landing_page_url":"http://dx.doi.org/10.3233/faia230481","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/FAIA230481","source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"sustainable_development_goals":[{"display_name":"Decent work and economic growth","score":0.6000000238418579,"id":"https://metadata.un.org/sdg/8"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320316083","display_name":"Tencent","ror":"https://ror.org/00hhjss72"},{"id":"https://openalex.org/F4320322927","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4387185398.pdf","grobid_xml":"https://content.openalex.org/works/W4387185398.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1954202239","https://openalex.org/W1970652428","https://openalex.org/W1992830366","https://openalex.org/W2102461176","https://openalex.org/W2103385859","https://openalex.org/W2135621733","https://openalex.org/W2175687390","https://openalex.org/W2234497665","https://openalex.org/W2245592118","https://openalex.org/W2471654536","https://openalex.org/W2483469645","https://openalex.org/W2890223884","https://openalex.org/W2896457183","https://openalex.org/W2917580301","https://openalex.org/W2933138175","https://openalex.org/W2938803199","https://openalex.org/W2943495267","https://openalex.org/W2951433247","https://openalex.org/W2956569764","https://openalex.org/W2982429054","https://openalex.org/W3037620288","https://openalex.org/W3037888463","https://openalex.org/W3044773187","https://openalex.org/W3111174583","https://openalex.org/W3124027051","https://openalex.org/W3146944767","https://openalex.org/W3170424177","https://openalex.org/W3177828909","https://openalex.org/W3189145766","https://openalex.org/W3194729882","https://openalex.org/W3197005806","https://openalex.org/W3213545574","https://openalex.org/W3214011531","https://openalex.org/W3216341763","https://openalex.org/W4220990251","https://openalex.org/W4254419505","https://openalex.org/W4281719345","https://openalex.org/W4281969706","https://openalex.org/W4286500588","https://openalex.org/W4297240271","https://openalex.org/W4317466348","https://openalex.org/W4327550249"],"related_works":["https://openalex.org/W2738420712","https://openalex.org/W2560969884","https://openalex.org/W4240785775","https://openalex.org/W2949879109","https://openalex.org/W2554214300","https://openalex.org/W2027223071","https://openalex.org/W2131939124","https://openalex.org/W2159848960","https://openalex.org/W2158291260","https://openalex.org/W2042181696"],"abstract_inverted_index":{"Directed":[0,115],"evolution":[1,22],"is":[2,46,64],"a":[3,28,65,106],"widely-used":[4],"strategy":[5],"of":[6,90,99,148],"protein":[7,11,58,77,89,140],"engineering":[8],"to":[9,26,52,60,85,120,136],"improve":[10],"function":[12],"via":[13],"mimicking":[14],"natural":[15],"mutation":[16,41],"and":[17,49,55,123,131],"selection.":[18],"Machine":[19],"learning-assisted":[20],"directed":[21,139],"(MLDE)":[23],"approaches":[24],"aim":[25],"learn":[27],"fitness":[29],"predictor,":[30],"thereby":[31],"efficiently":[32,53],"searching":[33],"for":[34,81,114,170],"optimal":[35,153],"mutants":[36,45,59,154],"within":[37],"the":[38,62,86,97,109,128,146],"vast":[39],"combinatorial":[40],"space.":[42],"Since":[43],"annotating":[44],"both":[47],"costly":[48],"labor-intensive,":[50],"how":[51],"sample":[54,122],"utilize":[56],"informative":[57],"train":[61],"predictor":[63],"critical":[66],"problem":[67],"in":[68,151],"MLDE.":[69],"Previous":[70],"MLDE":[71],"works":[72,161],"just":[73],"simply":[74],"utilized":[75],"pre-trained":[76],"language":[78,112],"models":[79],"(PPLMs)":[80],"sampling":[82,130],"without":[83],"tailoring":[84],"specific":[87],"target":[88],"interest,":[91],"which":[92,117],"has":[93],"not":[94],"fully":[95],"exploited":[96],"potential":[98],"PPLMs.":[100],"In":[101],"this":[102],"work,":[103],"we":[104],"propose":[105],"novel":[107],"method,":[108],"Actively-Finetuned":[110],"Protein":[111],"model":[113],"Evolution(AFP-DE),":[116],"leverages":[118],"PPLMs":[119],"actively":[121],"fine-tune":[124],"themselves,":[125],"continuously":[126],"improving":[127],"model\u2019s":[129],"overall":[132],"performance":[133],"through":[134],"iterations,":[135],"achieve":[137],"efficient":[138],"evolution.":[141],"Extensive":[142],"experiments":[143],"have":[144],"shown":[145],"effectiveness":[147],"our":[149],"method":[150],"generating":[152],"with":[155,163],"minimal":[156],"annotation":[157],"effort,":[158],"outperforming":[159],"previous":[160],"even":[162],"fewer":[164],"annotated":[165],"mutants,":[166],"making":[167],"it":[168],"budget-friendly":[169],"biological":[171],"experiments.":[172]},"counts_by_year":[{"year":2024,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
