{"id":"https://openalex.org/W3021431566","doi":"https://doi.org/10.3233/apc200107","title":"Toward Enabling Reproducibility for Data-Intensive Research Using the Whole Tale Platform","display_name":"Toward Enabling Reproducibility for Data-Intensive Research Using the Whole Tale Platform","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W3021431566","doi":"https://doi.org/10.3233/apc200107","mag":"3021431566"},"language":"en","primary_location":{"id":"doi:10.3233/apc200107","is_oa":true,"landing_page_url":"https://doi.org/10.3233/apc200107","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/APC200107","source":{"id":"https://openalex.org/S4210175178","display_name":"Advances in parallel computing","issn_l":"0927-5452","issn":["0927-5452","1879-808X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Parallel Computing","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/APC200107","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Chard Kyle","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chard Kyle","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Gaffney Niall","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gaffney Niall","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Hategan Mihael","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hategan Mihael","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Kowalik Kacper","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kowalik Kacper","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Lud\u00e4scher Bertram","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lud\u00e4scher Bertram","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"McPhillips Timothy","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"McPhillips Timothy","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Nabrzyski Jarek","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nabrzyski Jarek","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Stodden Victoria","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stodden Victoria","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Taylor Ian","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Taylor Ian","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Thelen Thomas","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thelen Thomas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Turk Matthew J.","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Turk Matthew J.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Willis Craig","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Willis Craig","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":12,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":6.6573,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.95567083,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.002199999988079071,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.8057000041007996},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7674000263214111},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.531499981880188},{"id":"https://openalex.org/keywords/middleware","display_name":"Middleware (distributed applications)","score":0.5044000148773193},{"id":"https://openalex.org/keywords/computational-model","display_name":"Computational model","score":0.3131999969482422},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.31139999628067017}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.8057000041007996},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7674000263214111},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7516999840736389},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.531499981880188},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5284000039100647},{"id":"https://openalex.org/C169468491","wikidata":"https://www.wikidata.org/wiki/Q146923","display_name":"Middleware (distributed applications)","level":2,"score":0.5044000148773193},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39590001106262207},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.3131999969482422},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.31139999628067017},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.3073999881744385},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.2874999940395355},{"id":"https://openalex.org/C9395851","wikidata":"https://www.wikidata.org/wiki/Q177929","display_name":"Stack (abstract data type)","level":2,"score":0.2874000072479248},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.2705000042915344},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.260699987411499},{"id":"https://openalex.org/C2778464652","wikidata":"https://www.wikidata.org/wiki/Q309849","display_name":"Open research","level":2,"score":0.25699999928474426}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3233/apc200107","is_oa":true,"landing_page_url":"https://doi.org/10.3233/apc200107","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/APC200107","source":{"id":"https://openalex.org/S4210175178","display_name":"Advances in parallel computing","issn_l":"0927-5452","issn":["0927-5452","1879-808X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Parallel Computing","raw_type":"book-chapter"},{"id":"pmh:oai:arXiv.org:2005.06087","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2005.06087","pdf_url":"https://arxiv.org/pdf/2005.06087","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"doi:10.3233/apc200107","is_oa":true,"landing_page_url":"https://doi.org/10.3233/apc200107","pdf_url":"https://ebooks.iospress.nl/pdf/doi/10.3233/APC200107","source":{"id":"https://openalex.org/S4210175178","display_name":"Advances in parallel computing","issn_l":"0927-5452","issn":["0927-5452","1879-808X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"book series"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Parallel Computing","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5106706385","display_name":"CC*DNI DIBBS: Merging Science and Cyberinfrastructure Pathways: The Whole Tale","funder_award_id":"1541450","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3021431566.pdf","grobid_xml":"https://content.openalex.org/works/W3021431566.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W1549945956","https://openalex.org/W1720430904","https://openalex.org/W1814568923","https://openalex.org/W2001818158","https://openalex.org/W2030620341","https://openalex.org/W2036318837","https://openalex.org/W2043701535","https://openalex.org/W2078962046","https://openalex.org/W2283438976","https://openalex.org/W2346143774","https://openalex.org/W2790988870","https://openalex.org/W2908269240","https://openalex.org/W2913555551","https://openalex.org/W2937207334","https://openalex.org/W2951547501","https://openalex.org/W2963957599","https://openalex.org/W3098428376","https://openalex.org/W3148640261","https://openalex.org/W4236671344"],"related_works":[],"abstract_inverted_index":{"Whole":[0,99],"Tale":[1,100],"http://wholetale.org":[2],"is":[3,72],"a":[4],"web-based,":[5],"open-source":[6],"platform":[7],"for":[8,20,61,87,134],"reproducible":[9,52],"research":[10,23,28,53],"supporting":[11],"the":[12,21,32,98],"creation,":[13],"sharing,":[14],"execution,":[15],"and":[16,35,40,59,82,106,117,122,138],"verification":[17],"of":[18],"\"Tales\"":[19],"scientific":[22,49],"community.":[24],"Tales":[25,137],"are":[26],"executable":[27],"objects":[29,54],"that":[30,55,91],"capture":[31],"code,":[33],"data,":[34],"environment":[36],"along":[37],"with":[38],"narrative":[39],"workflow":[41],"information":[42],"needed":[43],"to":[44,84],"re-create":[45],"computational":[46,62,131],"results":[47],"from":[48],"studies.":[50],"Creating":[51],"enable":[56],"reproducibility,":[57],"transparency,":[58],"re-execution":[60],"experiments":[63],"requiring":[64],"significant":[65],"compute":[66],"resources":[67],"or":[68],"utilizing":[69],"massive":[70],"data":[71,123],"an":[73],"especially":[74],"challenging":[75],"open":[76],"problem.":[77],"We":[78,103],"describe":[79],"opportunities,":[80],"challenges,":[81],"solutions":[83,107],"facilitating":[85],"reproducibility":[86],"data-and":[88],"compute-intensive":[89],"research,":[90],"we":[92,126],"call":[93],"\"Tales":[94],"at":[95],"Scale,\"":[96],"using":[97],"computing":[101],"platform.":[102],"highlight":[104],"challenges":[105,128],"in":[108,113,129],"frontend":[109],"responsiveness":[110],"needs,":[111],"gaps":[112],"current":[114],"middleware":[115],"design":[116],"implementation,":[118],"network":[119],"restrictions,":[120],"containerization,":[121],"access.":[124],"Finally,":[125],"discuss":[127],"packaging":[130],"experiment":[132],"implementations":[133],"portable":[135],"data-intensive":[136],"outline":[139],"future":[140],"work.":[141]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2020-05-13T00:00:00"}
