{"id":"https://openalex.org/W2172304783","doi":"https://doi.org/10.3233/ao-2011-0086","title":"Overcoming the ontology enrichment bottleneck with Quick Term Templates","display_name":"Overcoming the ontology enrichment bottleneck with Quick Term Templates","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2172304783","doi":"https://doi.org/10.3233/ao-2011-0086","mag":"2172304783"},"language":"en","primary_location":{"id":"doi:10.3233/ao-2011-0086","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-2011-0086","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018395535","display_name":"Philippe Rocca\u2010Serra","orcid":"https://orcid.org/0000-0001-9853-5668"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Philippe Rocca-Serra","raw_affiliation_strings":["Oxford e-Research Centre, University of Oxford, Oxford, UK. E-mails: proccaserra@gmail.com, sa.sansone@gmail.com"],"affiliations":[{"raw_affiliation_string":"Oxford e-Research Centre, University of Oxford, Oxford, UK. E-mails: proccaserra@gmail.com, sa.sansone@gmail.com","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053171726","display_name":"Alan Ruttenberg","orcid":"https://orcid.org/0000-0002-1604-3078"},"institutions":[{"id":"https://openalex.org/I4210120668","display_name":"Creative Commons","ror":"https://ror.org/02ed4cj64","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210120668"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan Ruttenberg","raw_affiliation_strings":["Science Commons, Cambridge, MA, USA. E-mail: alanruttenberg@gmail.com"],"affiliations":[{"raw_affiliation_string":"Science Commons, Cambridge, MA, USA. E-mail: alanruttenberg@gmail.com","institution_ids":["https://openalex.org/I4210120668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018993179","display_name":"Martin J. O\u2019Connor","orcid":"https://orcid.org/0000-0002-2256-2421"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin J. O'Connor","raw_affiliation_strings":["Stanford University, Stanford, CA, USA. E-mails: martin.oconnor@stanford.edu, whetzel@stanford.edu"],"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA. E-mails: martin.oconnor@stanford.edu, whetzel@stanford.edu","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051806625","display_name":"Patricia L. Whetzel","orcid":"https://orcid.org/0000-0002-3458-4839"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patricia L. Whetzel","raw_affiliation_strings":["Stanford University, Stanford, CA, USA. E-mails: martin.oconnor@stanford.edu, whetzel@stanford.edu"],"affiliations":[{"raw_affiliation_string":"Stanford University, Stanford, CA, USA. E-mails: martin.oconnor@stanford.edu, whetzel@stanford.edu","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049157539","display_name":"Daniel Schober","orcid":"https://orcid.org/0000-0001-8014-6648"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel Schober","raw_affiliation_strings":["Institute for Medical Biometry and Medical Informatics, University Clinic, Freiburg, Germany. E-mail: schober@imbi.uni-freiburg.de"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Biometry and Medical Informatics, University Clinic, Freiburg, Germany. E-mail: schober@imbi.uni-freiburg.de","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046703923","display_name":"Jay Greenbaum","orcid":null},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jay Greenbaum","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA. E-mails: bpeters@liai.org, jgbaum@gmail.com"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA. E-mails: bpeters@liai.org, jgbaum@gmail.com","institution_ids":["https://openalex.org/I1311191458"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008255694","display_name":"M\u00e9lanie Courtot","orcid":"https://orcid.org/0000-0002-9551-6370"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"M\u00e9lanie Courtot","raw_affiliation_strings":["Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC, Canada. E-mails: mcourtot@gmail.com, rbrinkman@bccrc.ca"],"affiliations":[{"raw_affiliation_string":"Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC, Canada. E-mails: mcourtot@gmail.com, rbrinkman@bccrc.ca","institution_ids":["https://openalex.org/I1289530486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035285628","display_name":"Ryan R. Brinkman","orcid":"https://orcid.org/0000-0002-9765-2990"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ryan R. Brinkman","raw_affiliation_strings":["Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC, Canada. E-mails: mcourtot@gmail.com, rbrinkman@bccrc.ca"],"affiliations":[{"raw_affiliation_string":"Terry Fox Laboratory, British Columbia Cancer Agency, Vancouver, BC, Canada. E-mails: mcourtot@gmail.com, rbrinkman@bccrc.ca","institution_ids":["https://openalex.org/I1289530486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008806860","display_name":"Susanna\u2010Assunta Sansone","orcid":"https://orcid.org/0000-0001-5306-5690"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Susanna Assunta Sansone","raw_affiliation_strings":["Oxford e-Research Centre, University of Oxford, Oxford, UK. E-mails: proccaserra@gmail.com, sa.sansone@gmail.com"],"affiliations":[{"raw_affiliation_string":"Oxford e-Research Centre, University of Oxford, Oxford, UK. E-mails: proccaserra@gmail.com, sa.sansone@gmail.com","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034262562","display_name":"Richard H. Scheuermann","orcid":"https://orcid.org/0000-0003-1355-892X"},"institutions":[{"id":"https://openalex.org/I4388891891","display_name":"Southwestern Medical Center","ror":"https://ror.org/05d80e146","country_code":null,"type":"healthcare","lineage":["https://openalex.org/I4388891891"]},{"id":"https://openalex.org/I867280407","display_name":"The University of Texas Southwestern Medical Center","ror":"https://ror.org/05byvp690","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I867280407"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Scheuermann","raw_affiliation_strings":["Department of Pathology and Division of Biomedical Informatics, U.T. Southwestern Medical Center, Dallas, TX, USA. E-mail: richard.scheuermann@utsouthwestern.edu"],"affiliations":[{"raw_affiliation_string":"Department of Pathology and Division of Biomedical Informatics, U.T. Southwestern Medical Center, Dallas, TX, USA. E-mail: richard.scheuermann@utsouthwestern.edu","institution_ids":["https://openalex.org/I867280407","https://openalex.org/I4388891891"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023547268","display_name":"Bjoern Peters","orcid":"https://orcid.org/0000-0002-8457-6693"},"institutions":[{"id":"https://openalex.org/I1311191458","display_name":"La Jolla Institute for Immunology","ror":"https://ror.org/05vkpd318","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1311191458"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bjoern Peters","raw_affiliation_strings":["La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA. E-mails: bpeters@liai.org, jgbaum@gmail.com"],"affiliations":[{"raw_affiliation_string":"La Jolla Institute for Allergy and Immunology, La Jolla, CA, USA. E-mails: bpeters@liai.org, jgbaum@gmail.com","institution_ids":["https://openalex.org/I1311191458"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5018395535"],"corresponding_institution_ids":["https://openalex.org/I40120149"],"apc_list":null,"apc_paid":null,"fwci":1.9961,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.86685121,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"6","issue":"1","first_page":"13","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9355999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8777406811714172},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.7212893962860107},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.7088453769683838},{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.6064444780349731},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5615924000740051},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43480342626571655},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2407158613204956},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.06533545255661011}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8777406811714172},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.7212893962860107},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.7088453769683838},{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.6064444780349731},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5615924000740051},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43480342626571655},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2407158613204956},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.06533545255661011},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/ao-2011-0086","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-2011-0086","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2184636786","display_name":null,"funder_award_id":"BB/G000638/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G412979241","display_name":null,"funder_award_id":"BB/I000771/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G651559499","display_name":null,"funder_award_id":"BB/I025840/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7775520706","display_name":null,"funder_award_id":"BB/E025080/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W184356029","https://openalex.org/W1482585805","https://openalex.org/W1498424588","https://openalex.org/W1501546233","https://openalex.org/W1849487635","https://openalex.org/W1896983529","https://openalex.org/W2032578329","https://openalex.org/W2033377040","https://openalex.org/W2046060933","https://openalex.org/W2084115201","https://openalex.org/W2099218891","https://openalex.org/W2113142309","https://openalex.org/W2127480960","https://openalex.org/W2130430745","https://openalex.org/W2142734829","https://openalex.org/W2154829072","https://openalex.org/W2163670493","https://openalex.org/W2180180358"],"related_works":["https://openalex.org/W2376314740","https://openalex.org/W1606406758","https://openalex.org/W2393185060","https://openalex.org/W2120460904","https://openalex.org/W1581660190","https://openalex.org/W1975174578","https://openalex.org/W2347278957","https://openalex.org/W1524308472","https://openalex.org/W180293255","https://openalex.org/W2179953469"],"abstract_inverted_index":{"When":[0],"developing":[1],"the":[2,8,35],"Ontology":[3],"of":[4,10,16],"Biomedical":[5],"Investigations":[6],"(OBI),":[7],"process":[9,36],"adding":[11],"classes":[12],"with":[13],"similar":[14],"patterns":[15],"logical":[17],"definition":[18],"is":[19,37],"time":[20],"consuming,":[21],"error":[22],"prone,":[23],"and":[24],"requires":[25],"an":[26],"editor":[27],"to":[28],"have":[29],"some":[30],"expertise":[31],"in":[32],"OWL.":[33],"Moreover,":[34]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-25T23:56:10.502304","created_date":"2025-10-10T00:00:00"}
