{"id":"https://openalex.org/W1628054318","doi":"https://doi.org/10.3233/ao-2010-0079","title":"Ontological realism: A methodology for coordinated evolution of scientific ontologies","display_name":"Ontological realism: A methodology for coordinated evolution of scientific ontologies","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W1628054318","doi":"https://doi.org/10.3233/ao-2010-0079","mag":"1628054318","pmid":"https://pubmed.ncbi.nlm.nih.gov/21637730"},"language":"en","primary_location":{"id":"doi:10.3233/ao-2010-0079","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-2010-0079","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3104413","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051216244","display_name":"Barry Smith","orcid":"https://orcid.org/0000-0003-1384-116X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Barry Smith","raw_affiliation_strings":["New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, Buffalo, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, Buffalo, NY, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007545122","display_name":"Werner Ceusters","orcid":"https://orcid.org/0000-0002-2676-8689"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Werner Ceusters","raw_affiliation_strings":["New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, Buffalo, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, Buffalo, NY, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5051216244"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":9.5804,"has_fulltext":false,"cited_by_count":332,"citation_normalized_percentile":{"value":0.98826332,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"5","issue":"3-4","first_page":"139","last_page":"188"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9746000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8099605441093445},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8069671392440796},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5140932202339172},{"id":"https://openalex.org/keywords/realism","display_name":"Realism","score":0.42878806591033936},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.3977981507778168},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.12240281701087952}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8099605441093445},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8069671392440796},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5140932202339172},{"id":"https://openalex.org/C543847140","wikidata":"https://www.wikidata.org/wiki/Q2642826","display_name":"Realism","level":2,"score":0.42878806591033936},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.3977981507778168},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.12240281701087952}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.3233/ao-2010-0079","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-2010-0079","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"},{"id":"pmid:21637730","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21637730","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied ontology","raw_type":null},{"id":"pmh:oai:philarchive.org/rec/SMIORA-2","is_oa":false,"landing_page_url":"https://philarchive.org/rec/SMIORA-2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402130","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:philpapers.org/rec/SMIORA-2","is_oa":false,"landing_page_url":"https://philpapers.org/rec/SMIORA-2","pdf_url":null,"source":{"id":"https://openalex.org/S4306402131","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3104413","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3104413","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Appl Ontol","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:3104413","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3104413","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Appl Ontol","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G2225135173","display_name":null,"funder_award_id":"U54 HG004028","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G648025423","display_name":null,"funder_award_id":"R21 LM009824","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":105,"referenced_works":["https://openalex.org/W5603278","https://openalex.org/W63642558","https://openalex.org/W69326722","https://openalex.org/W92076569","https://openalex.org/W122531845","https://openalex.org/W135649940","https://openalex.org/W138632492","https://openalex.org/W248605024","https://openalex.org/W405410721","https://openalex.org/W407632632","https://openalex.org/W416000672","https://openalex.org/W574309030","https://openalex.org/W1493816286","https://openalex.org/W1505011908","https://openalex.org/W1522659348","https://openalex.org/W1526655180","https://openalex.org/W1537816306","https://openalex.org/W1555520648","https://openalex.org/W1564597950","https://openalex.org/W1580895464","https://openalex.org/W1597349540","https://openalex.org/W1606658147","https://openalex.org/W1623284047","https://openalex.org/W1628054318","https://openalex.org/W1654805921","https://openalex.org/W1698401853","https://openalex.org/W1845814381","https://openalex.org/W1940888119","https://openalex.org/W1969271108","https://openalex.org/W1975116200","https://openalex.org/W1979248081","https://openalex.org/W1980320658","https://openalex.org/W1981625432","https://openalex.org/W1981732549","https://openalex.org/W1983403209","https://openalex.org/W1984422860","https://openalex.org/W1987006508","https://openalex.org/W2007312415","https://openalex.org/W2016602738","https://openalex.org/W2025705313","https://openalex.org/W2028043278","https://openalex.org/W2029081120","https://openalex.org/W2075123415","https://openalex.org/W2075784534","https://openalex.org/W2079135682","https://openalex.org/W2084104913","https://openalex.org/W2087991322","https://openalex.org/W2088561970","https://openalex.org/W2089196478","https://openalex.org/W2091966899","https://openalex.org/W2092957590","https://openalex.org/W2097395913","https://openalex.org/W2098741739","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2104942450","https://openalex.org/W2105783830","https://openalex.org/W2107658650","https://openalex.org/W2109899437","https://openalex.org/W2112589398","https://openalex.org/W2113142309","https://openalex.org/W2113795209","https://openalex.org/W2122976400","https://openalex.org/W2125904022","https://openalex.org/W2126839335","https://openalex.org/W2127359631","https://openalex.org/W2131465295","https://openalex.org/W2133109597","https://openalex.org/W2133992441","https://openalex.org/W2134418889","https://openalex.org/W2135140530","https://openalex.org/W2135681143","https://openalex.org/W2135940255","https://openalex.org/W2137815920","https://openalex.org/W2138162238","https://openalex.org/W2142346403","https://openalex.org/W2146871965","https://openalex.org/W2148014577","https://openalex.org/W2155535944","https://openalex.org/W2155842211","https://openalex.org/W2156239742","https://openalex.org/W2156997379","https://openalex.org/W2157938305","https://openalex.org/W2158623598","https://openalex.org/W2160674432","https://openalex.org/W2161883093","https://openalex.org/W2163670493","https://openalex.org/W2166718065","https://openalex.org/W2167087873","https://openalex.org/W2175978988","https://openalex.org/W2178026535","https://openalex.org/W2187275197","https://openalex.org/W2189389933","https://openalex.org/W2229659654","https://openalex.org/W2260690031","https://openalex.org/W2325095251","https://openalex.org/W2325218811","https://openalex.org/W2325480617","https://openalex.org/W2402811906","https://openalex.org/W2489718228","https://openalex.org/W2749005443","https://openalex.org/W2753533763","https://openalex.org/W2779460634","https://openalex.org/W2914205435","https://openalex.org/W4300949102"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W4391913857","https://openalex.org/W2064997403","https://openalex.org/W113141941"],"abstract_inverted_index":{"Since":[0],"2002":[1],"we":[2,95,103,136],"have":[3],"been":[4,46],"testing":[5],"and":[6,54,156],"refining":[7],"a":[8,31,84,148],"methodology":[9,44,64],"for":[10,76],"ontology":[11],"development":[12],"that":[13,73,86,135],"is":[14,107],"now":[15],"being":[16,165],"used":[17],"by":[18,49],"multiple":[19],"groups":[20],"of":[21,39,108,114,161,171],"researchers":[22,50],"in":[23,30,34,51,82,100,126,139],"different":[24],"life":[25],"science":[26],"domains.":[27],"Gary":[28],"Merrill,":[29],"recent":[32],"paper":[33],"this":[35,43],"journal,":[36],"describes":[37],"some":[38,160],"the":[40,52,58,63,112,153,169,172],"reasons":[41],"why":[42],"has":[45],"found":[47],"attractive":[48],"biological":[53],"biomedical":[55],"sciences.":[56],"At":[57],"same":[59],"time":[60],"he":[61],"assails":[62],"on":[65,70,133],"philosophical":[66],"grounds,":[67],"focusing":[68],"specifically":[69],"our":[71,115,127],"recommendation":[72],"ontologies":[74],"developed":[75],"scientific":[77],"purposes":[78],"should":[79],"be":[80],"constructed":[81],"such":[83],"way":[85],"their":[87],"terms":[88],"are":[89,164],"seen":[90],"as":[91],"referring":[92],"to":[93,111,151,157],"what":[94],"call":[96],"universals":[97,134],"or":[98],"types":[99],"reality.":[101],"As":[102],"show,":[104],"Merrill's":[105],"critique":[106],"little":[109],"relevance":[110],"success":[113],"realist":[116,154],"project,":[117],"since":[118],"it":[119,143],"not":[120,138],"only":[121],"reveals":[122],"no":[123],"actual":[124],"errors":[125],"work":[128],"but":[129],"also":[130],"criticizes":[131],"views":[132],"do":[137],"fact":[140],"hold.":[141],"However,":[142],"nonetheless":[144],"provides":[145],"us":[146],"with":[147],"valuable":[149],"opportunity":[150],"clarify":[152],"methodology,":[155],"show":[158],"how":[159],"its":[162],"principles":[163],"applied,":[166],"especially":[167],"within":[168],"framework":[170],"OBO":[173],"(Open":[174],"Biomedical":[175],"Ontologies)":[176],"Foundry":[177],"initiative.":[178]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":31},{"year":2021,"cited_by_count":24},{"year":2020,"cited_by_count":49},{"year":2019,"cited_by_count":24},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":18},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":22},{"year":2013,"cited_by_count":24},{"year":2012,"cited_by_count":24}],"updated_date":"2026-07-17T09:13:05.818461","created_date":"2025-10-10T00:00:00"}
