{"id":"https://openalex.org/W1494147629","doi":"https://doi.org/10.3233/ao-2009-0062","title":"The development of a schema for semantic annotation: Gain brought by a formal ontological method","display_name":"The development of a schema for semantic annotation: Gain brought by a formal ontological method","publication_year":2009,"publication_date":"2009-01-01","ids":{"openalex":"https://openalex.org/W1494147629","doi":"https://doi.org/10.3233/ao-2009-0062","mag":"1494147629"},"language":"en","primary_location":{"id":"doi:10.3233/ao-2009-0062","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-2009-0062","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090787812","display_name":"Ai Kawazoe","orcid":null},"institutions":[{"id":"https://openalex.org/I184597095","display_name":"National Institute of Informatics","ror":"https://ror.org/04ksd4g47","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I184597095","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Ai Kawazoe","raw_affiliation_strings":["National Institute of Informatics, Tokyo, Japan","(Correspd. Tel.: +81 3 4212 2536; Fax: +81 3 4212 2536; E-mail: zoeai@nii.ac.jp) National Institute of Informatics, Tokyo, Japan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Informatics, Tokyo, Japan","institution_ids":["https://openalex.org/I184597095"]},{"raw_affiliation_string":"(Correspd. Tel.: +81 3 4212 2536; Fax: +81 3 4212 2536; E-mail: zoeai@nii.ac.jp) National Institute of Informatics, Tokyo, Japan#TAB#","institution_ids":["https://openalex.org/I184597095"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109245262","display_name":"Lihua Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I184597095","display_name":"National Institute of Informatics","ror":"https://ror.org/04ksd4g47","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I184597095","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Lihua Jin","raw_affiliation_strings":["National Institute of Informatics, Tokyo, Japan","(National Institute of Informatics, Tokyo, Japan)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Informatics, Tokyo, Japan","institution_ids":["https://openalex.org/I184597095"]},{"raw_affiliation_string":"(National Institute of Informatics, Tokyo, Japan)","institution_ids":["https://openalex.org/I184597095"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109250202","display_name":"Mika Shigematsu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086300","display_name":"National Institute of Infectious Diseases","ror":"https://ror.org/001ggbx22","country_code":"JP","type":"government","lineage":["https://openalex.org/I1333985979","https://openalex.org/I4210086300"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Mika Shigematsu","raw_affiliation_strings":["National Institute of Infectious Diseases, Tokyo, Japan","National Institute of Infectious Diseases, , Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Infectious Diseases, Tokyo, Japan","institution_ids":["https://openalex.org/I4210086300"]},{"raw_affiliation_string":"National Institute of Infectious Diseases, , Tokyo, Japan","institution_ids":["https://openalex.org/I4210086300"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085658641","display_name":"Daisuke Bekki","orcid":"https://orcid.org/0000-0002-9988-1260"},"institutions":[{"id":"https://openalex.org/I26120043","display_name":"Ochanomizu University","ror":"https://ror.org/03599d813","country_code":"JP","type":"education","lineage":["https://openalex.org/I26120043"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Daisuke Bekki","raw_affiliation_strings":["Ochanomizu University, Tokyo, Japan","Ochanomizu Univ., Tokyo, Japan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ochanomizu University, Tokyo, Japan","institution_ids":["https://openalex.org/I26120043"]},{"raw_affiliation_string":"Ochanomizu Univ., Tokyo, Japan#TAB#","institution_ids":["https://openalex.org/I26120043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042291484","display_name":"Roberto A. Barrero","orcid":"https://orcid.org/0000-0002-7735-665X"},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Roberto Barrero","raw_affiliation_strings":["Centre for Comparative Genomics, Murdoch University, Perth, WA, Australia","Centre for Comparative Genomics, Murdoch University, Perth, WA, Australia#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Perth, WA, Australia","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Centre for Comparative Genomics, Murdoch University, Perth, WA, Australia#TAB#","institution_ids":["https://openalex.org/I176790772"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038593658","display_name":"Kiyosu Taniguchi","orcid":"https://orcid.org/0000-0003-4584-6168"},"institutions":[{"id":"https://openalex.org/I4210086300","display_name":"National Institute of Infectious Diseases","ror":"https://ror.org/001ggbx22","country_code":"JP","type":"government","lineage":["https://openalex.org/I1333985979","https://openalex.org/I4210086300"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kiyosu Taniguchi","raw_affiliation_strings":["National Institute of Infectious Diseases, Tokyo, Japan","National Institute of Infectious Diseases, , Tokyo, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Infectious Diseases, Tokyo, Japan","institution_ids":["https://openalex.org/I4210086300"]},{"raw_affiliation_string":"National Institute of Infectious Diseases, , Tokyo, Japan","institution_ids":["https://openalex.org/I4210086300"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073413742","display_name":"Nigel Collier","orcid":"https://orcid.org/0000-0002-7230-4164"},"institutions":[{"id":"https://openalex.org/I184597095","display_name":"National Institute of Informatics","ror":"https://ror.org/04ksd4g47","country_code":"JP","type":"facility","lineage":["https://openalex.org/I1319490839","https://openalex.org/I184597095","https://openalex.org/I4210158934"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Nigel Collier","raw_affiliation_strings":["National Institute of Informatics, Tokyo, Japan","(National Institute of Informatics, Tokyo, Japan)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Informatics, Tokyo, Japan","institution_ids":["https://openalex.org/I184597095"]},{"raw_affiliation_string":"(National Institute of Informatics, Tokyo, Japan)","institution_ids":["https://openalex.org/I184597095"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5090787812"],"corresponding_institution_ids":["https://openalex.org/I184597095"],"apc_list":null,"apc_paid":null,"fwci":0.4054,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.61829709,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"4","issue":"1","first_page":"5","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8745120763778687},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.7295007705688477},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.46322396397590637},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4539889097213745},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.44879332184791565},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35323449969291687},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3281935453414917}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8745120763778687},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.7295007705688477},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46322396397590637},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4539889097213745},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.44879332184791565},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35323449969291687},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3281935453414917}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3233/ao-2009-0062","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-2009-0062","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"},{"id":"pmh:oai:researchrepository.murdoch.edu.au:4953","is_oa":false,"landing_page_url":"http://researchrepository.murdoch.edu.au/id/eprint/4953/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400274","display_name":"Murdoch Research Repository (Murdoch University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176790772","host_organization_name":"Murdoch University","host_organization_lineage":["https://openalex.org/I176790772"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"  Kawazoe, A., Jin, L., Shigematsu, M., Bekki, D., Barrero, R.A. &lt;http://researchrepository.murdoch.edu.au/view/author/Barrero, Roberto.html&gt;, Taniguchi, K. and Collier, N.   (2009)  The development of a schema for semantic annotation: Gain brought by a formal ontological method.   Applied Ontology, 4  (1).   pp. 5-20.  ","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.4300000071525574,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W78386069","https://openalex.org/W1487196387","https://openalex.org/W1493596129","https://openalex.org/W1500718495","https://openalex.org/W1514643294","https://openalex.org/W1548622009","https://openalex.org/W1550258693","https://openalex.org/W1553976193","https://openalex.org/W1555467355","https://openalex.org/W1940888119","https://openalex.org/W1987760095","https://openalex.org/W2018874418","https://openalex.org/W2023736097","https://openalex.org/W2023746318","https://openalex.org/W2038429440","https://openalex.org/W2047782770","https://openalex.org/W2048140075","https://openalex.org/W2058856481","https://openalex.org/W2068882115","https://openalex.org/W2076439247","https://openalex.org/W2097395913","https://openalex.org/W2103666183","https://openalex.org/W2106361952","https://openalex.org/W2140796896","https://openalex.org/W2156537900","https://openalex.org/W2156909104","https://openalex.org/W2158623598","https://openalex.org/W2163107094","https://openalex.org/W2163751633","https://openalex.org/W2910955212","https://openalex.org/W2977393556"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2556260348"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3,111,114],"will":[4],"report":[5,106],"annotation":[6,24,99],"experiments":[7],"which":[8],"show":[9,82],"the":[10,30,53,58,78,90,116],"advantage":[11],"of":[12,55,60,74,92],"applying":[13,66],"a":[14,20,38,43],"formal":[15,67,117],"ontological":[16,68],"methodology":[17,69],"for":[18,22,88,101],"constructing":[19],"schema":[21,45,100],"semantic":[23,96],"to":[25],"mark":[26],"up":[27],"terms":[28],"in":[29,70],"public":[31],"health":[32],"domain.":[33],"We":[34,104],"demonstrate":[35],"that":[36,83],"(1)":[37],"traditional":[39],"task-oriented":[40],"approach":[41],"with":[42],"simple":[44],"can":[46],"cause":[47],"several":[48],"critical":[49],"problems,":[50],"and":[51,57,76,109],"(2)":[52],"performance":[54],"annotators":[56],"quality":[59],"annotated":[61],"corpus":[62],"is":[63],"improved":[64],"by":[65],"analyzing":[71],"\u2018markable\u2019":[72],"categories":[73],"concepts":[75],"restructuring":[77],"schema.":[79],"These":[80],"results":[81],"disciplined":[84],"methods":[85],"are":[86],"useful":[87],"controlling":[89],"development":[91],"even":[93],"quite":[94],"modest":[95],"structures":[97],"like":[98],"entity":[102],"recognition.":[103],"also":[105],"philosophical/logical":[107],"considerations":[108],"decisions":[110],"made":[112],"when":[113],"adopted":[115],"approach.":[118]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-30T06:05:26.967640","created_date":"2025-10-10T00:00:00"}
