{"id":"https://openalex.org/W1577838689","doi":"https://doi.org/10.3233/ao-2008-0054","title":"Pathway knowledge base: An integrated pathway resource using BioPAX","display_name":"Pathway knowledge base: An integrated pathway resource using BioPAX","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1577838689","doi":"https://doi.org/10.3233/ao-2008-0054","mag":"1577838689"},"language":"en","primary_location":{"id":"doi:10.3233/ao-2008-0054","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-2008-0054","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058395183","display_name":"Nikesh Kotecha","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Nikesh Kotecha","raw_affiliation_strings":["Stanford Medical Informatics, Stanford University, Stanford CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Medical Informatics, Stanford University, Stanford CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039089192","display_name":"Kyle Bruck","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyle Bruck","raw_affiliation_strings":["Stanford Medical Informatics, Stanford University, Stanford CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Medical Informatics, Stanford University, Stanford CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013021926","display_name":"William W. Lu","orcid":"https://orcid.org/0000-0002-5780-2886"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Lu","raw_affiliation_strings":["Stanford Medical Informatics, Stanford University, Stanford CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Medical Informatics, Stanford University, Stanford CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041175834","display_name":"Nigam H. Shah","orcid":"https://orcid.org/0000-0001-9385-7158"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nigam Shah","raw_affiliation_strings":["(Correspd. Tel.: +650 725 6236; Fax: +650 725 7944; E-mail: nigam@stanford.edu) Stanford Medical Informatics, Stanford University, Stanford, CA 94305, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"(Correspd. Tel.: +650 725 6236; Fax: +650 725 7944; E-mail: nigam@stanford.edu) Stanford Medical Informatics, Stanford University, Stanford, CA 94305, USA#TAB#","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5058395183"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":null,"apc_paid":null,"fwci":0.2693,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.57468754,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"3","issue":"4","first_page":"235","last_page":"245"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7870169878005981},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.6022101044654846},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4963839650154114},{"id":"https://openalex.org/keywords/base","display_name":"Base (topology)","score":0.4712912142276764},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.39221838116645813},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.27316009998321533},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.09667739272117615},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06721231341362}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7870169878005981},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.6022101044654846},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4963839650154114},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.4712912142276764},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.39221838116645813},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.27316009998321533},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.09667739272117615},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06721231341362},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/ao-2008-0054","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-2008-0054","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1643996292","https://openalex.org/W2047496194","https://openalex.org/W2057563358","https://openalex.org/W2069162648","https://openalex.org/W2113024448","https://openalex.org/W2120702690","https://openalex.org/W2121905803","https://openalex.org/W2133298156","https://openalex.org/W2134394193","https://openalex.org/W2143969914","https://openalex.org/W2147714160","https://openalex.org/W2150908245","https://openalex.org/W2155331065","https://openalex.org/W2159675211","https://openalex.org/W2165674132","https://openalex.org/W2165741325","https://openalex.org/W2242459625"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2382290278","https://openalex.org/W2385713529","https://openalex.org/W2599749361","https://openalex.org/W205221648","https://openalex.org/W2377533180"],"abstract_inverted_index":{"The":[0],"role":[1],"of":[2],"proteins":[3],"and":[4,16],"their":[5,17],"function":[6],"in":[7,28],"pathways":[8],"is":[9,31],"crucial":[10],"to":[11,21,36],"understanding":[12],"complex":[13],"biological":[14],"processes":[15],"failures":[18],"that":[19],"lead":[20],"disease.":[22],"With":[23],"over":[24],"200":[25],"pathway":[26,39],"databases":[27],"existence,":[29],"it":[30],"not":[32],"possible":[33],"for":[34],"biologists":[35],"examine":[37],"a":[38]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
