{"id":"https://openalex.org/W3025862657","doi":"https://doi.org/10.3233/ao-200228","title":"BiGe-Onto: An ontology-based system for managing biodiversity and biogeography data1","display_name":"BiGe-Onto: An ontology-based system for managing biodiversity and biogeography data1","publication_year":2020,"publication_date":"2020-05-15","ids":{"openalex":"https://openalex.org/W3025862657","doi":"https://doi.org/10.3233/ao-200228","mag":"3025862657"},"language":"en","primary_location":{"id":"doi:10.3233/ao-200228","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-200228","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/11336/140687","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053741897","display_name":"Marcos Z\u00e1rate","orcid":"https://orcid.org/0000-0001-8851-8602"},"institutions":[{"id":"https://openalex.org/I4210095825","display_name":"Centro Cient\u00edfico Tecnol\u00f3gico - San Juan","ror":"https://ror.org/00kwm3d29","country_code":"AR","type":"facility","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210095825","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I4210142366","display_name":"Centro Cient\u00edfico Tecnol\u00f3gico Patag\u00f3nico","ror":"https://ror.org/049xnr573","country_code":"AR","type":"facility","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4210142366","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"Marcos Z\u00e1rate","raw_affiliation_strings":["Centre for the Study of Marine Systems, Centro Nacional Patag\u00f3nico (CENPAT-CONICET), Puerto Madryn, Argentina","Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for the Study of Marine Systems, Centro Nacional Patag\u00f3nico (CENPAT-CONICET), Puerto Madryn, Argentina","institution_ids":["https://openalex.org/I4210142366"]},{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas, Argentina","institution_ids":["https://openalex.org/I4210095825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024810921","display_name":"Germ\u00e1n Braun","orcid":"https://orcid.org/0000-0003-0769-6680"},"institutions":[{"id":"https://openalex.org/I4210095825","display_name":"Centro Cient\u00edfico Tecnol\u00f3gico - San Juan","ror":"https://ror.org/00kwm3d29","country_code":"AR","type":"facility","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210095825","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I70368782","display_name":"National University of Comahue","ror":"https://ror.org/02zvkba47","country_code":"AR","type":"education","lineage":["https://openalex.org/I70368782"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Germ\u00e1n Braun","raw_affiliation_strings":["Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas, Argentina","Grupo de Investigaci\u00f3n en Lenguajes e Inteligencia Artificial, Departamento de Teor\u00eda de la Computaci\u00f3n, Universidad Nacional del Comahue (UNCOMA), Neuqu\u00e9n, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas, Argentina","institution_ids":["https://openalex.org/I4210095825"]},{"raw_affiliation_string":"Grupo de Investigaci\u00f3n en Lenguajes e Inteligencia Artificial, Departamento de Teor\u00eda de la Computaci\u00f3n, Universidad Nacional del Comahue (UNCOMA), Neuqu\u00e9n, Argentina","institution_ids":["https://openalex.org/I70368782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066226229","display_name":"Pablo Rub\u00e9n Fillottrani","orcid":"https://orcid.org/0000-0003-0906-867X"},"institutions":[{"id":"https://openalex.org/I4210122970","display_name":"Comisi\u00f3n de Investigaciones Cient\u00edficas","ror":"https://ror.org/02s7sax82","country_code":"AR","type":"government","lineage":["https://openalex.org/I4210122970"]},{"id":"https://openalex.org/I56858762","display_name":"Universidad Nacional del Sur","ror":"https://ror.org/028crwz56","country_code":"AR","type":"education","lineage":["https://openalex.org/I56858762"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Pablo Fillottrani","raw_affiliation_strings":["Comisi\u00f3n de Investigaciones Cient\u00edficas, provincia de Buenos Aires, Argentina","Computer Science and Engineering Department, Universidad Nacional del Sur (UNS), Bahia Blanca, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Comisi\u00f3n de Investigaciones Cient\u00edficas, provincia de Buenos Aires, Argentina","institution_ids":["https://openalex.org/I4210122970"]},{"raw_affiliation_string":"Computer Science and Engineering Department, Universidad Nacional del Sur (UNS), Bahia Blanca, Argentina","institution_ids":["https://openalex.org/I56858762"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058156675","display_name":"Claudio Delrieux","orcid":"https://orcid.org/0000-0002-2727-8374"},"institutions":[{"id":"https://openalex.org/I4210095825","display_name":"Centro Cient\u00edfico Tecnol\u00f3gico - San Juan","ror":"https://ror.org/00kwm3d29","country_code":"AR","type":"facility","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210095825","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I56858762","display_name":"Universidad Nacional del Sur","ror":"https://ror.org/028crwz56","country_code":"AR","type":"education","lineage":["https://openalex.org/I56858762"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Claudio Delrieux","raw_affiliation_strings":["Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas, Argentina","Electric and Computer Engineering Department, Universidad Nacional del Sur (UNS), Bahia Blanca, Argentina","E-mail:"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas, Argentina","institution_ids":["https://openalex.org/I4210095825"]},{"raw_affiliation_string":"Electric and Computer Engineering Department, Universidad Nacional del Sur (UNS), Bahia Blanca, Argentina","institution_ids":["https://openalex.org/I56858762"]},{"raw_affiliation_string":"E-mail:","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049017887","display_name":"Mirtha Lewis","orcid":"https://orcid.org/0000-0001-6262-6226"},"institutions":[{"id":"https://openalex.org/I4210142366","display_name":"Centro Cient\u00edfico Tecnol\u00f3gico Patag\u00f3nico","ror":"https://ror.org/049xnr573","country_code":"AR","type":"facility","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4210142366","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Mirtha Lewis","raw_affiliation_strings":["Centre for the Study of Marine Systems, Centro Nacional Patag\u00f3nico (CENPAT-CONICET), Puerto Madryn, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for the Study of Marine Systems, Centro Nacional Patag\u00f3nico (CENPAT-CONICET), Puerto Madryn, Argentina","institution_ids":["https://openalex.org/I4210142366"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5053741897"],"corresponding_institution_ids":["https://openalex.org/I4210095825","https://openalex.org/I4210142366"],"apc_list":null,"apc_paid":null,"fwci":1.2241,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.83938338,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"15","issue":"4","first_page":"411","last_page":"437"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.794048547744751},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7129368782043457},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6972662210464478},{"id":"https://openalex.org/keywords/biodiversity","display_name":"Biodiversity","score":0.6311190724372864},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.5772426128387451},{"id":"https://openalex.org/keywords/biogeography","display_name":"Biogeography","score":0.5280687808990479},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.5021696090698242},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43398332595825195},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3269025683403015},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2962385416030884},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.26064595580101013},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.24774226546287537},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.24149131774902344}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.794048547744751},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7129368782043457},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6972662210464478},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.6311190724372864},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.5772426128387451},{"id":"https://openalex.org/C123575903","wikidata":"https://www.wikidata.org/wiki/Q52106","display_name":"Biogeography","level":2,"score":0.5280687808990479},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.5021696090698242},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43398332595825195},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3269025683403015},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2962385416030884},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.26064595580101013},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.24774226546287537},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.24149131774902344},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.3233/ao-200228","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-200228","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"},{"id":"pmh:oai:ri.conicet.gov.ar:11336/140687","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/140687","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:ri.conicet.gov.ar:11336/194531","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/194531","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"}],"best_oa_location":{"id":"pmh:oai:ri.conicet.gov.ar:11336/140687","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/140687","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.8199999928474426}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W5067071","https://openalex.org/W1518959137","https://openalex.org/W1555751548","https://openalex.org/W1602915269","https://openalex.org/W1808554854","https://openalex.org/W1849603791","https://openalex.org/W2010013632","https://openalex.org/W2035791470","https://openalex.org/W2035898274","https://openalex.org/W2054470867","https://openalex.org/W2069827080","https://openalex.org/W2070416595","https://openalex.org/W2076381052","https://openalex.org/W2103649339","https://openalex.org/W2108234081","https://openalex.org/W2135247576","https://openalex.org/W2136291980","https://openalex.org/W2136539307","https://openalex.org/W2155370454","https://openalex.org/W2159327312","https://openalex.org/W2163816695","https://openalex.org/W2248098515","https://openalex.org/W2402011812","https://openalex.org/W2521644033","https://openalex.org/W2571179382","https://openalex.org/W2577114663","https://openalex.org/W2616338822","https://openalex.org/W2785634938","https://openalex.org/W2786568953","https://openalex.org/W2806458049","https://openalex.org/W2942024964","https://openalex.org/W3014252040","https://openalex.org/W4237672871","https://openalex.org/W4239696231","https://openalex.org/W6737834103","https://openalex.org/W6770440861","https://openalex.org/W6871304790","https://openalex.org/W6962297110","https://openalex.org/W7014291074"],"related_works":["https://openalex.org/W2038821533","https://openalex.org/W2295889387","https://openalex.org/W76044956","https://openalex.org/W129667569","https://openalex.org/W3142934089","https://openalex.org/W2528665947","https://openalex.org/W2764264137","https://openalex.org/W4297737180","https://openalex.org/W2226235235","https://openalex.org/W2899333420"],"abstract_inverted_index":{"Great":[0],"progress":[1],"to":[2,70,82,159],"digitize":[3],"the":[4,32,49,99,106],"world\u2019s":[5],"available":[6],"Biodiversity":[7,41,57,87,101],"and":[8,22,38,63,88,105,139],"Biogeography":[9],"data":[10,17,58,84,91],"have":[11],"been":[12],"made":[13],"recently,":[14],"but":[15],"managing":[16],"from":[18,86,165],"many":[19],"different":[20],"providers":[21],"research":[23],"domains":[24],"still":[25],"remains":[26],"a":[27,60,68,121,148],"challenge.":[28],"A":[29],"review":[30],"of":[31,35,116,133],"current":[33],"landscape":[34],"metadata":[36],"standards":[37],"ontologies":[39],"in":[40,59,127,136],"sciences":[42],"suggests":[43],"that":[44,156,162],"existing":[45],"standards,":[46],"such":[47],"as":[48],"Darwin":[50],"Core":[51],"terminology,":[52],"are":[53],"inadequate":[54],"for":[55,144],"describing":[56],"semantically":[61],"meaningful":[62],"computationally":[64],"useful":[65],"way.":[66],"As":[67,90],"contribution":[69],"fill":[71],"this":[72],"gap,":[73],"we":[74,93],"present":[75],"an":[76,130,141],"ontology-based":[77],"system,":[78],"called":[79,124],"BiGe-Onto,":[80],"designed":[81],"manage":[83,163],"together":[85],"Biogeography.":[89],"sources,":[92],"use":[94,154],"two":[95],"internationally":[96],"recognized":[97],"repositories:":[98],"Global":[100],"Information":[102,109],"Facility":[103],"(GBIF)":[104],"Ocean":[107],"Biogeographic":[108],"System":[110],"(OBIS).":[111],"BiGe-Onto":[112,118,125,134],"system":[113],"is":[114],"composed":[115],"(i)":[117],"Architecture":[119],"(ii)":[120],"conceptual":[122],"model":[123],"specified":[126],"OntoUML,":[128],"(iii)":[129],"operational":[131],"version":[132],"encoded":[135],"OWL":[137],"2,":[138],"(iv)":[140],"integrated":[142],"dataset":[143],"its":[145],"exploitation":[146],"through":[147],"SPARQL":[149],"endpoint.":[150],"We":[151],"will":[152],"show":[153],"cases":[155],"allow":[157],"researchers":[158],"answer":[160],"questions":[161],"information":[164],"both":[166],"domains.":[167]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
