{"id":"https://openalex.org/W2946937346","doi":"https://doi.org/10.3233/ao-190211","title":"Quality assurance of complex ChEBI concepts based on number of relationship types","display_name":"Quality assurance of complex ChEBI concepts based on number of relationship types","publication_year":2019,"publication_date":"2019-05-31","ids":{"openalex":"https://openalex.org/W2946937346","doi":"https://doi.org/10.3233/ao-190211","mag":"2946937346"},"language":"en","primary_location":{"id":"doi:10.3233/ao-190211","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-190211","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052279352","display_name":"Hasan Yumak","orcid":null},"institutions":[{"id":"https://openalex.org/I15653065","display_name":"Borough of Manhattan Community College","ror":"https://ror.org/040hwr020","country_code":"US","type":"education","lineage":["https://openalex.org/I15653065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hasan Yumak","raw_affiliation_strings":["Science Department, BMCC, CUNY, New York, NY 10007, USA. E-mails:\u00a0hyumak@bmcc.cuny.edu,\u00a0lchen@bmcc.cuny.edu"],"affiliations":[{"raw_affiliation_string":"Science Department, BMCC, CUNY, New York, NY 10007, USA. E-mails:\u00a0hyumak@bmcc.cuny.edu,\u00a0lchen@bmcc.cuny.edu","institution_ids":["https://openalex.org/I15653065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100758589","display_name":"Ling Zheng","orcid":"https://orcid.org/0000-0002-6709-828X"},"institutions":[{"id":"https://openalex.org/I141450709","display_name":"Monmouth University","ror":"https://ror.org/01d6qxv05","country_code":"US","type":"education","lineage":["https://openalex.org/I141450709"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ling Zheng","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Monmouth University, West Long Branch, NJ 07764, USA. E-mail:\u00a0lzheng@monmouth.edu"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Monmouth University, West Long Branch, NJ 07764, USA. E-mail:\u00a0lzheng@monmouth.edu","institution_ids":["https://openalex.org/I141450709"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100411084","display_name":"Ling Chen","orcid":"https://orcid.org/0000-0001-6074-523X"},"institutions":[{"id":"https://openalex.org/I15653065","display_name":"Borough of Manhattan Community College","ror":"https://ror.org/040hwr020","country_code":"US","type":"education","lineage":["https://openalex.org/I15653065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ling Chen","raw_affiliation_strings":["Science Department, BMCC, CUNY, New York, NY 10007, USA. E-mails:\u00a0hyumak@bmcc.cuny.edu,\u00a0lchen@bmcc.cuny.edu"],"affiliations":[{"raw_affiliation_string":"Science Department, BMCC, CUNY, New York, NY 10007, USA. E-mails:\u00a0hyumak@bmcc.cuny.edu,\u00a0lchen@bmcc.cuny.edu","institution_ids":["https://openalex.org/I15653065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040065844","display_name":"Michael Halper","orcid":"https://orcid.org/0000-0003-4135-0069"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Halper","raw_affiliation_strings":["Department of Informatics, New Jersey Institute of Technology, Newark, NJ 07102, USA. E-mail:\u00a0michael.halper@njit.edu"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, New Jersey Institute of Technology, Newark, NJ 07102, USA. E-mail:\u00a0michael.halper@njit.edu","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077648725","display_name":"Yehoshua Perl","orcid":"https://orcid.org/0000-0003-1940-9386"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yehoshua Perl","raw_affiliation_strings":["Department of Computer Science, New Jersey Institute of Technology, Newark, NJ 07102, USA. E-mail:\u00a0perl@njit.edu"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, New Jersey Institute of Technology, Newark, NJ 07102, USA. E-mail:\u00a0perl@njit.edu","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031305148","display_name":"Gareth Owen","orcid":"https://orcid.org/0000-0001-7265-5776"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gareth Owen","raw_affiliation_strings":["The European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, CB10 1SD, United Kingdom. E-mail:\u00a0gowen@ebi.ac.uk"],"affiliations":[{"raw_affiliation_string":"The European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, CB10 1SD, United Kingdom. E-mail:\u00a0gowen@ebi.ac.uk","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100758589"],"corresponding_institution_ids":["https://openalex.org/I141450709"],"apc_list":null,"apc_paid":null,"fwci":0.1705,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.51335627,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"14","issue":"3","first_page":"199","last_page":"214"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9345999956130981,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7746967673301697},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5360506176948547},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.45139026641845703},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41049593687057495},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3929595351219177},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34430134296417236},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.078947514295578}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7746967673301697},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5360506176948547},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.45139026641845703},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41049593687057495},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3929595351219177},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34430134296417236},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.078947514295578},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/ao-190211","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-190211","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W46109541","https://openalex.org/W89564465","https://openalex.org/W100560853","https://openalex.org/W568917201","https://openalex.org/W638750599","https://openalex.org/W1483357098","https://openalex.org/W1548669383","https://openalex.org/W1551684349","https://openalex.org/W1935434993","https://openalex.org/W1965091013","https://openalex.org/W2010866855","https://openalex.org/W2031629409","https://openalex.org/W2078288474","https://openalex.org/W2081865838","https://openalex.org/W2099685256","https://openalex.org/W2103017472","https://openalex.org/W2104990432","https://openalex.org/W2106537457","https://openalex.org/W2108414747","https://openalex.org/W2123152121","https://openalex.org/W2126147317","https://openalex.org/W2128982045","https://openalex.org/W2132218677","https://openalex.org/W2133615210","https://openalex.org/W2140611297","https://openalex.org/W2143094087","https://openalex.org/W2149677084","https://openalex.org/W2157190311","https://openalex.org/W2159583324","https://openalex.org/W2161290748","https://openalex.org/W2161919540","https://openalex.org/W2188166121","https://openalex.org/W2344597831","https://openalex.org/W2396132865","https://openalex.org/W2592369982","https://openalex.org/W2620878783","https://openalex.org/W2739999456","https://openalex.org/W2798912774","https://openalex.org/W2805552870","https://openalex.org/W2906877236","https://openalex.org/W2923731298","https://openalex.org/W4285719527","https://openalex.org/W6603671272","https://openalex.org/W6639220378","https://openalex.org/W6750746951","https://openalex.org/W6802600628"],"related_works":["https://openalex.org/W1667647204","https://openalex.org/W2404647514","https://openalex.org/W4247536566","https://openalex.org/W2018477250","https://openalex.org/W3119814709","https://openalex.org/W4241418540","https://openalex.org/W1508895727","https://openalex.org/W2725786787","https://openalex.org/W4283160672","https://openalex.org/W1590965489"],"abstract_inverted_index":{"The":[0,34],"Chemical":[1],"Entities":[2],"of":[3,59,64,72,103,107,145,149,169],"Biological":[4],"Interest":[5],"(ChEBI)":[6],"ontology":[7,31],"is":[8,90,129],"an":[9,69],"important":[10],"reference":[11],"for":[12,178],"applications":[13,39],"dealing":[14],"with":[15,79,175,198],"chemical":[16],"annotations":[17],"and":[18,23,28,61,110,135,153,158,166,183],"data":[19],"mining.":[20],"Modeling":[21],"errors":[22,35,60,148],"inconsistencies":[24],"in":[25],"the":[26,53,95,101,132,136,141,161,180,184],"large":[27],"complex":[29],"ChEBI":[30,108,122,188],"are":[32],"unavoidable.":[33],"can":[36],"adversely":[37],"affect":[38],"depen":[40],"dent":[41],"on":[42,52,131,196],"it.":[43],"We":[44],"present":[45],"a":[46,56,104,112,121,151,192],"quality":[47],"assurance":[48],"(QA)":[49],"methodology":[50,194],"based":[51],"correspondence":[54],"between":[55],"concept\u2019s":[57],"number":[58,63],"its":[62],"distinct":[65],"relationship":[66,81,152,200],"types":[67,82],"\u2013":[68],"intuitive":[70],"measure":[71],"complexity.":[73],"Specifically,":[74],"we":[75],"hypothesize":[76],"that":[77],"concepts":[78,109,197],"more":[80,86],"tend":[83],"to":[84,93,139,160],"concentrate":[85],"errors.":[87],"A":[88,124],"study":[89],"carried":[91],"out":[92],"assess":[94],"hypothesis.":[96,142],"Two":[97],"domain":[98,181],"experts":[99],"reviewed":[100,119],"correctness":[102],"random":[105],"sample":[106],"formed":[111],"QA":[113,193],"consensus":[114,133],"report,":[115],"which":[116],"was":[117,173],"then":[118],"by":[120],"curator.":[123],"two-tailed":[125],"Fisher\u2019s":[126],"exact":[127],"test":[128,140],"performed":[130],"report":[134,138],"curator\u2019s":[137,185],"Various":[143],"kinds":[144],"errors,":[146],"including":[147],"both":[150,179],"non-relationship":[154],"nature,":[155],"were":[156],"discovered":[157],"reported":[159],"ChEBI\u2019s":[162],"curator,":[163],"who":[164],"confirmed":[165,174],"corrected":[167],"65.8%":[168],"them.":[170],"Our":[171],"hypothesis":[172],"statistical":[176],"significance":[177],"experts\u2019":[182],"reviews.":[186],"Thus,":[187],"curators":[189],"should":[190],"employ":[191],"concentrating":[195],"many":[199],"types.":[201]},"counts_by_year":[{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
