{"id":"https://openalex.org/W2460787798","doi":"https://doi.org/10.3233/ao-160167","title":"FueL: Representing function structure and function dependencies with a UML profile for function modeling","display_name":"FueL: Representing function structure and function dependencies with a UML profile for function modeling","publication_year":2016,"publication_date":"2016-06-06","ids":{"openalex":"https://openalex.org/W2460787798","doi":"https://doi.org/10.3233/ao-160167","mag":"2460787798"},"language":"en","primary_location":{"id":"doi:10.3233/ao-160167","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-160167","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087160134","display_name":"Patryk Burek","orcid":"https://orcid.org/0000-0001-8165-0272"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Patryk Burek","raw_affiliation_strings":["University of Leipzig","Institute of Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany. E-mails:\u00a0patryk.burek@imise.uni-leipzig.de,\u00a0heinrich.herre@imise.uni-leipzig.de"],"affiliations":[{"raw_affiliation_string":"University of Leipzig","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Institute of Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany. E-mails:\u00a0patryk.burek@imise.uni-leipzig.de,\u00a0heinrich.herre@imise.uni-leipzig.de","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020824094","display_name":"Frank Loebe","orcid":"https://orcid.org/0000-0003-4537-5212"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Frank Loebe","raw_affiliation_strings":["University of Leipzig","Department of Computer Science, University of Leipzig, Leipzig, Germany. E-mail:\u00a0frank.loebe@informatik.uni-leipzig.de"],"affiliations":[{"raw_affiliation_string":"University of Leipzig","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Department of Computer Science, University of Leipzig, Leipzig, Germany. E-mail:\u00a0frank.loebe@informatik.uni-leipzig.de","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020087024","display_name":"Heinrich Herre","orcid":"https://orcid.org/0000-0001-5343-9218"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Heinrich Herre","raw_affiliation_strings":["University of Leipzig","Institute of Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany. E-mails:\u00a0patryk.burek@imise.uni-leipzig.de,\u00a0heinrich.herre@imise.uni-leipzig.de"],"affiliations":[{"raw_affiliation_string":"University of Leipzig","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Institute of Medical Informatics, Statistics and Epidemiology, University of Leipzig, Leipzig, Germany. E-mails:\u00a0patryk.burek@imise.uni-leipzig.de,\u00a0heinrich.herre@imise.uni-leipzig.de","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5020824094"],"corresponding_institution_ids":["https://openalex.org/I926574661"],"apc_list":null,"apc_paid":null,"fwci":0.857,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.83412225,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"11","issue":"2","first_page":"155","last_page":"203"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7584028244018555},{"id":"https://openalex.org/keywords/applications-of-uml","display_name":"Applications of UML","score":0.626554012298584},{"id":"https://openalex.org/keywords/unified-modeling-language","display_name":"Unified Modeling Language","score":0.5797473192214966},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4836503267288208},{"id":"https://openalex.org/keywords/modeling-language","display_name":"Modeling language","score":0.47907644510269165},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.45217517018318176},{"id":"https://openalex.org/keywords/uml-tool","display_name":"UML tool","score":0.4374789595603943},{"id":"https://openalex.org/keywords/function-model","display_name":"Function model","score":0.41712355613708496},{"id":"https://openalex.org/keywords/artifact","display_name":"Artifact (error)","score":0.4170651137828827},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.40905919671058655},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3516225814819336},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.3409275412559509},{"id":"https://openalex.org/keywords/business-process-modeling","display_name":"Business process modeling","score":0.2992865741252899},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2601359188556671},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1731891632080078},{"id":"https://openalex.org/keywords/business-process","display_name":"Business process","score":0.10560062527656555},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09294512867927551}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7584028244018555},{"id":"https://openalex.org/C41298492","wikidata":"https://www.wikidata.org/wiki/Q4781506","display_name":"Applications of UML","level":4,"score":0.626554012298584},{"id":"https://openalex.org/C145644426","wikidata":"https://www.wikidata.org/wiki/Q169411","display_name":"Unified Modeling Language","level":3,"score":0.5797473192214966},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4836503267288208},{"id":"https://openalex.org/C179603123","wikidata":"https://www.wikidata.org/wiki/Q1941921","display_name":"Modeling language","level":3,"score":0.47907644510269165},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.45217517018318176},{"id":"https://openalex.org/C146939238","wikidata":"https://www.wikidata.org/wiki/Q2467310","display_name":"UML tool","level":4,"score":0.4374789595603943},{"id":"https://openalex.org/C162798781","wikidata":"https://www.wikidata.org/wiki/Q5508775","display_name":"Function model","level":5,"score":0.41712355613708496},{"id":"https://openalex.org/C2779010991","wikidata":"https://www.wikidata.org/wiki/Q2720909","display_name":"Artifact (error)","level":2,"score":0.4170651137828827},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.40905919671058655},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3516225814819336},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.3409275412559509},{"id":"https://openalex.org/C207505557","wikidata":"https://www.wikidata.org/wiki/Q4374012","display_name":"Business process modeling","level":4,"score":0.2992865741252899},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2601359188556671},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1731891632080078},{"id":"https://openalex.org/C85345410","wikidata":"https://www.wikidata.org/wiki/Q851587","display_name":"Business process","level":3,"score":0.10560062527656555},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09294512867927551},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C42360764","wikidata":"https://www.wikidata.org/wiki/Q83588","display_name":"Chemical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C2778648169","wikidata":"https://www.wikidata.org/wiki/Q967768","display_name":"Compatibility (geochemistry)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/ao-160167","is_oa":false,"landing_page_url":"https://doi.org/10.3233/ao-160167","pdf_url":null,"source":{"id":"https://openalex.org/S31619775","display_name":"Applied Ontology","issn_l":"1570-5838","issn":["1570-5838","1875-8533"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Ontology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5099999904632568}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":102,"referenced_works":["https://openalex.org/W59128197","https://openalex.org/W99288245","https://openalex.org/W100269524","https://openalex.org/W102398446","https://openalex.org/W122034221","https://openalex.org/W156592512","https://openalex.org/W161179413","https://openalex.org/W174691002","https://openalex.org/W175551733","https://openalex.org/W181991631","https://openalex.org/W187569310","https://openalex.org/W187961017","https://openalex.org/W276748248","https://openalex.org/W425733178","https://openalex.org/W656193271","https://openalex.org/W973254134","https://openalex.org/W1490101767","https://openalex.org/W1492703355","https://openalex.org/W1504705153","https://openalex.org/W1505537393","https://openalex.org/W1527927437","https://openalex.org/W1538830215","https://openalex.org/W1541807484","https://openalex.org/W1562240463","https://openalex.org/W1583037893","https://openalex.org/W1596892422","https://openalex.org/W1603057119","https://openalex.org/W1610029862","https://openalex.org/W1754864101","https://openalex.org/W1819479198","https://openalex.org/W1856203234","https://openalex.org/W1918604556","https://openalex.org/W1970846593","https://openalex.org/W1975635121","https://openalex.org/W1977378431","https://openalex.org/W1981740064","https://openalex.org/W1992753815","https://openalex.org/W1995862677","https://openalex.org/W1996457327","https://openalex.org/W1998661888","https://openalex.org/W2003534440","https://openalex.org/W2006915611","https://openalex.org/W2007786863","https://openalex.org/W2037382435","https://openalex.org/W2069157810","https://openalex.org/W2075922286","https://openalex.org/W2084998011","https://openalex.org/W2086215840","https://openalex.org/W2089631246","https://openalex.org/W2097688921","https://openalex.org/W2103017472","https://openalex.org/W2103573767","https://openalex.org/W2105941683","https://openalex.org/W2107038434","https://openalex.org/W2108234081","https://openalex.org/W2116078287","https://openalex.org/W2116190908","https://openalex.org/W2121939662","https://openalex.org/W2122924260","https://openalex.org/W2129671194","https://openalex.org/W2137665890","https://openalex.org/W2138537116","https://openalex.org/W2151579561","https://openalex.org/W2152044093","https://openalex.org/W2156094678","https://openalex.org/W2166752908","https://openalex.org/W2170518453","https://openalex.org/W2180180358","https://openalex.org/W2181567849","https://openalex.org/W2189510109","https://openalex.org/W2282090784","https://openalex.org/W2332286398","https://openalex.org/W2401583007","https://openalex.org/W2404350942","https://openalex.org/W2404911151","https://openalex.org/W2470537467","https://openalex.org/W2491568943","https://openalex.org/W2604823638","https://openalex.org/W2908189279","https://openalex.org/W3041149780","https://openalex.org/W4206448857","https://openalex.org/W4243089390","https://openalex.org/W4285719527","https://openalex.org/W4297982464","https://openalex.org/W6601852286","https://openalex.org/W6606229955","https://openalex.org/W6606589982","https://openalex.org/W6607664842","https://openalex.org/W6621710807","https://openalex.org/W6630325559","https://openalex.org/W6635068123","https://openalex.org/W6635789670","https://openalex.org/W6640289347","https://openalex.org/W6677608316","https://openalex.org/W6678289719","https://openalex.org/W6680263775","https://openalex.org/W6680753811","https://openalex.org/W6682332427","https://openalex.org/W6685468047","https://openalex.org/W6713187182","https://openalex.org/W6757405299","https://openalex.org/W6808003913"],"related_works":["https://openalex.org/W2387087283","https://openalex.org/W2359043774","https://openalex.org/W2103939680","https://openalex.org/W2101953902","https://openalex.org/W2489425329","https://openalex.org/W2020544977","https://openalex.org/W2379051938","https://openalex.org/W2351105263","https://openalex.org/W2360164652","https://openalex.org/W2394049954"],"abstract_inverted_index":{"Modeling":[0,35,104],"functions":[1,134],"is":[2,18,44,70,150,156,159],"a":[3,46,95,177],"key":[4],"aspect":[5],"of":[6,20,111,114,116,127,131,138,161,172,179,193,198],"artifact":[7],"design,":[8],"including":[9],"software":[10,42,60],"engineering":[11],"and":[12,53,84,158,208],"business":[13],"systems":[14,25],"modeling,":[15,26,100],"but":[16],"it":[17],"likewise":[19],"fundamental":[21],"importance":[22],"in":[23,29],"natural":[24],"for":[27,50,72,98],"example":[28],"modeling":[30,52,73,81,110,162],"biological":[31],"organisms.":[32],"The":[33,62,140,165],"Unified":[34],"Language":[36,105],"(UML),":[37],"which":[38],"originated":[39],"from":[40],"object-oriented":[41],"engineering,":[43],"nowadays":[45],"de":[47],"facto":[48],"standard":[49],"conceptual":[51],"its":[54],"current":[55],"applications":[56,192],"go":[57],"far":[58],"beyond":[59],"engineering.":[61],"paper":[63,187],"investigates":[64],"first":[65],"to":[66,79],"what":[67],"extent":[68],"UML":[69,83,96],"suited":[71],"functions.":[74],"We":[75],"survey":[76],"various":[77],"approaches":[78],"function":[80,99,122,128],"with":[82,135],"identify":[85],"their":[86],"limitations.":[87],"Based":[88],"on":[89,170],"the":[90,102,109,112,153,173,180,186,191,196,204],"conducted":[91],"analysis,":[92],"we":[93,145],"introduce":[94],"profile":[97,155,166,205],"called":[101],"Function":[103,175],"(FueL).":[106],"FueL":[107,149,194],"enables":[108],"structure":[113],"functions,":[115,119],"relations":[117,132],"between":[118],"such":[120],"as":[121,124,126],"decomposition,":[123],"well":[125],"ascription,":[129],"i.e.,":[130],"linking":[133],"other":[136],"types":[137],"entities.":[139],"main":[141],"application":[142],"field":[143],"that":[144,190],"considered":[146],"while":[147],"developing":[148],"bioinformatics.":[151],"Nonetheless,":[152],"presented":[154],"domain-independent":[157],"capable":[160],"cross-domain":[163],"systems.":[164],"has":[167],"been":[168],"tested":[169],"fragments":[171],"Molecular":[174],"Ontology,":[176],"sub-ontology":[178],"Gene":[181],"Ontology.":[182],"In":[183],"this":[184],"connection":[185],"further":[188],"demonstrates":[189],"transcend":[195],"construction":[197],"new":[199],"models,":[200],"by":[201],"showing":[202],"how":[203],"aids":[206],"restructuring":[207],"refactoring":[209],"existing":[210],"models.":[211]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-01-08T20:05:33.558190","created_date":"2025-10-10T00:00:00"}
