{"id":"https://openalex.org/W2942430461","doi":"https://doi.org/10.3233/978-1-61499-959-1-85","title":"Approaching Clinical Data Transformation from Disparate Healthcare IT Systems Through a Modular Framework","display_name":"Approaching Clinical Data Transformation from Disparate Healthcare IT Systems Through a Modular Framework","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2942430461","doi":"https://doi.org/10.3233/978-1-61499-959-1-85","mag":"2942430461","pmid":"https://pubmed.ncbi.nlm.nih.gov/30942720"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-959-1-85","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-959-1-85","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004451518","display_name":"Lo An Phan-Vogtmann","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Phan-Vogtmann Lo An","raw_affiliation_strings":["Institute of Medical Statistics, Computer and Data Sciences (IMSID), Jena University Hospital, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Statistics, Computer and Data Sciences (IMSID), Jena University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014820086","display_name":"Alexander Helhorn","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Helhorn Alexander","raw_affiliation_strings":["Data Integration Center, IT Department, Jena University Hospital, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Data Integration Center, IT Department, Jena University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040725259","display_name":"Henner Kruse","orcid":"https://orcid.org/0000-0003-0286-8682"},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kruse Henner M.","raw_affiliation_strings":["Data Integration Center, IT Department, Jena University Hospital, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Data Integration Center, IT Department, Jena University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Thomas Eric","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Eric","raw_affiliation_strings":["Data Integration Center, IT Department, Jena University Hospital, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Data Integration Center, IT Department, Jena University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090273823","display_name":"Andrew J Heidel","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Heidel Andrew J.","raw_affiliation_strings":["Data Integration Center, IT Department, Jena University Hospital, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Data Integration Center, IT Department, Jena University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034310415","display_name":"Kutaiba Saleh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Saleh Kutaiba","raw_affiliation_strings":["Data Integration Center, IT Department, Jena University Hospital, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Data Integration Center, IT Department, Jena University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082937448","display_name":"Florian Ri\u00dfner","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rissner Florian","raw_affiliation_strings":["Center for Clinical Studies, Jena University Hospital, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Clinical Studies, Jena University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112829519","display_name":"Martin Specht","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Specht Martin","raw_affiliation_strings":["IT Department, Jena University Hospital, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"IT Department, Jena University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064378696","display_name":"Andreas Henkel","orcid":"https://orcid.org/0000-0001-8466-2893"},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Henkel Andreas","raw_affiliation_strings":["IT Department, Jena University Hospital, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"IT Department, Jena University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Scherag André","orcid":null},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Scherag André","raw_affiliation_strings":["Institute of Medical Statistics, Computer and Data Sciences (IMSID), Jena University Hospital, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Medical Statistics, Computer and Data Sciences (IMSID), Jena University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049579630","display_name":"Danny Ammon","orcid":"https://orcid.org/0000-0001-8960-7316"},"institutions":[{"id":"https://openalex.org/I4210134900","display_name":"Jena University Hospital","ror":"https://ror.org/035rzkx15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210134900"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ammon Danny","raw_affiliation_strings":["Data Integration Center, IT Department, Jena University Hospital, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Data Integration Center, IT Department, Jena University Hospital, Jena, Germany","institution_ids":["https://openalex.org/I4210134900"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5004451518"],"corresponding_institution_ids":["https://openalex.org/I4210134900"],"apc_list":null,"apc_paid":null,"fwci":3.3206,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.915,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"258","issue":null,"first_page":"85","last_page":"89"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9484999775886536,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.9044486284255981},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.8016651272773743},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7343404293060303},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6521810293197632},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5738008618354797},{"id":"https://openalex.org/keywords/transformation","display_name":"Transformation (genetics)","score":0.5410915613174438},{"id":"https://openalex.org/keywords/data-transformation","display_name":"Data transformation","score":0.5408978462219238},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.5269352197647095},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.4911799132823944},{"id":"https://openalex.org/keywords/legacy-system","display_name":"Legacy system","score":0.41650110483169556},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.384080708026886},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3776148557662964},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2635936737060547},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.24744006991386414},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2240208089351654},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13663437962532043},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.12105399370193481}],"concepts":[{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.9044486284255981},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.8016651272773743},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7343404293060303},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6521810293197632},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5738008618354797},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.5410915613174438},{"id":"https://openalex.org/C150670458","wikidata":"https://www.wikidata.org/wiki/Q4272815","display_name":"Data transformation","level":3,"score":0.5408978462219238},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.5269352197647095},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.4911799132823944},{"id":"https://openalex.org/C105446022","wikidata":"https://www.wikidata.org/wiki/Q445962","display_name":"Legacy system","level":3,"score":0.41650110483169556},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.384080708026886},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3776148557662964},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2635936737060547},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.24744006991386414},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2240208089351654},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13663437962532043},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.12105399370193481},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005858","descriptor_name":"Germany","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005858","descriptor_name":"Germany","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005858","descriptor_name":"Germany","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-61499-959-1-85","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-959-1-85","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:30942720","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30942720","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2093262417","https://openalex.org/W4205595170","https://openalex.org/W2364409751","https://openalex.org/W2393746579","https://openalex.org/W2015777333","https://openalex.org/W1503556420","https://openalex.org/W2096343008","https://openalex.org/W2361930117","https://openalex.org/W4284882772","https://openalex.org/W2950156231"],"abstract_inverted_index":{"Many":[0],"healthcare":[1,40],"IT":[2],"systems":[3,12,37],"in":[4],"Germany":[5],"are":[6],"unable":[7],"to":[8,21,27,84],"interoperate":[9],"with":[10,34,111],"other":[11,112],"through":[13],"standardised":[14],"data":[15,25,33,59,73,76,98],"formats.":[16],"Therefore":[17],"it":[18],"is":[19,93],"difficult":[20],"store":[22],"and":[23,26,38,75,95,105],"retrieve":[24],"establish":[28],"a":[29,47,54,65],"systematic":[30],"collection":[31],"of":[32,109],"provenance":[35],"across":[36],"even":[39],"institutions.":[41],"We":[42],"outline":[43],"the":[44,68,107],"concept":[45],"for":[46,56,87],"Transformation":[48],"Pipeline":[49],"that":[50],"can":[51],"act":[52],"as":[53,79,81],"processor":[55],"proprietary":[57],"medical":[58],"formats":[60],"from":[61,101],"multiple":[62],"sources.":[63],"Through":[64],"modular":[66],"construction,":[67],"pipeline":[69],"relies":[70],"on":[71,82],"different":[72],"extraction":[74],"enrichment":[77],"modules":[78],"well":[80],"interfaces":[83],"external":[85],"definitions":[86,104],"interoperability":[88],"standards.":[89],"The":[90],"developed":[91],"solution":[92],"extendable":[94],"reusable,":[96],"enabling":[97],"transformation":[99],"independent":[100],"current":[102],"format":[103],"entailing":[106],"opportunity":[108],"collaboration":[110],"research":[113],"groups.":[114]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":3}],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2025-10-10T00:00:00"}