{"id":"https://openalex.org/W2902559244","doi":"https://doi.org/10.3233/978-1-61499-921-8-15","title":"Secondary Use of Healthcare Structured Data: The Challenge of Domain-Knowledge Based Extraction of Features","display_name":"Secondary Use of Healthcare Structured Data: The Challenge of Domain-Knowledge Based Extraction of Features","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2902559244","doi":"https://doi.org/10.3233/978-1-61499-921-8-15","mag":"2902559244","pmid":"https://pubmed.ncbi.nlm.nih.gov/30306898"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-921-8-15","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-921-8-15","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023539531","display_name":"Emmanuel Chazard","orcid":"https://orcid.org/0000-0001-7841-5925"},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Chazard Emmanuel","raw_affiliation_strings":["CERIM EA2694, Lille University, F-59000 Lille"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CERIM EA2694, Lille University, F-59000 Lille","institution_ids":["https://openalex.org/I2279609970"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ficheur Grégoire","orcid":null},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ficheur Grégoire","raw_affiliation_strings":["CERIM EA2694, Lille University, F-59000 Lille"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CERIM EA2694, Lille University, F-59000 Lille","institution_ids":["https://openalex.org/I2279609970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041329360","display_name":"Alexandre Caron","orcid":"https://orcid.org/0000-0002-9872-0633"},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Caron Alexandre","raw_affiliation_strings":["CERIM EA2694, Lille University, F-59000 Lille"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CERIM EA2694, Lille University, F-59000 Lille","institution_ids":["https://openalex.org/I2279609970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053450353","display_name":"Antoine Lamer","orcid":"https://orcid.org/0000-0002-9546-1808"},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lamer Antoine","raw_affiliation_strings":["Public Health Department, CHU Lille, F-59000 Lille"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Public Health Department, CHU Lille, F-59000 Lille","institution_ids":["https://openalex.org/I2279609970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013990412","display_name":"Julien Labreuche","orcid":"https://orcid.org/0000-0002-3384-0423"},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Labreuche Julien","raw_affiliation_strings":["Public Health Department, CHU Lille, F-59000 Lille"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Public Health Department, CHU Lille, F-59000 Lille","institution_ids":["https://openalex.org/I2279609970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048180788","display_name":"Marc Cuggia","orcid":"https://orcid.org/0000-0001-6943-3937"},"institutions":[{"id":"https://openalex.org/I4210105651","display_name":"Laboratoire Traitement du Signal et de l'Image","ror":"https://ror.org/01f1amm71","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I154526488","https://openalex.org/I4210105651","https://openalex.org/I4210105774","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cuggia Marc","raw_affiliation_strings":["LTSI, Universit\u00e9 de Rennes 1, F-35000 Rennes, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LTSI, Universit\u00e9 de Rennes 1, F-35000 Rennes, France","institution_ids":["https://openalex.org/I56067802","https://openalex.org/I4210105651"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Genin Michaël","orcid":null},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Genin Michaël","raw_affiliation_strings":["CERIM EA2694, Lille University, F-59000 Lille"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CERIM EA2694, Lille University, F-59000 Lille","institution_ids":["https://openalex.org/I2279609970"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047176448","display_name":"Guillaume Bouzill\u00e9","orcid":"https://orcid.org/0000-0002-3637-6558"},"institutions":[{"id":"https://openalex.org/I4210105651","display_name":"Laboratoire Traitement du Signal et de l'Image","ror":"https://ror.org/01f1amm71","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I154526488","https://openalex.org/I4210105651","https://openalex.org/I4210105774","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bouzille Guillaume","raw_affiliation_strings":["LTSI, Universit\u00e9 de Rennes 1, F-35000 Rennes, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LTSI, Universit\u00e9 de Rennes 1, F-35000 Rennes, France","institution_ids":["https://openalex.org/I56067802","https://openalex.org/I4210105651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005205127","display_name":"Alain Duhamel","orcid":"https://orcid.org/0000-0003-0392-7701"},"institutions":[{"id":"https://openalex.org/I2279609970","display_name":"Universit\u00e9 de Lille","ror":"https://ror.org/02kzqn938","country_code":"FR","type":"education","lineage":["https://openalex.org/I2279609970"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Duhamel Alain","raw_affiliation_strings":["CERIM EA2694, Lille University, F-59000 Lille"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CERIM EA2694, Lille University, F-59000 Lille","institution_ids":["https://openalex.org/I2279609970"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5023539531"],"corresponding_institution_ids":["https://openalex.org/I2279609970"],"apc_list":null,"apc_paid":null,"fwci":2.3904,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.89025812,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"255","issue":null,"first_page":"15","last_page":"19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.600600004196167,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.600600004196167,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.06870000064373016,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.029100000858306885,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5639420747756958},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.5471460223197937},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.4849843978881836},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.47904980182647705},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.45819103717803955},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.41955041885375977},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.4149159789085388},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.2945230007171631},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.19075599312782288},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.08094936609268188},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.048016369342803955},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.04427346587181091}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5639420747756958},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.5471460223197937},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.4849843978881836},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.47904980182647705},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.45819103717803955},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.41955041885375977},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.4149159789085388},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.2945230007171631},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.19075599312782288},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.08094936609268188},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.048016369342803955},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.04427346587181091},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003695","descriptor_name":"Delivery of Health Care","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.3233/978-1-61499-921-8-15","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-921-8-15","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:30306898","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30306898","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:HAL:hal-01903860v1","is_oa":false,"landing_page_url":"https://univ-rennes.hal.science/hal-01903860","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics, 2018, 255, pp.15-19. ⟨10.3233/978-1-61499-921-8-15⟩","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2377297411","https://openalex.org/W3148217948","https://openalex.org/W2375788636","https://openalex.org/W2358561207","https://openalex.org/W2975617233","https://openalex.org/W1583422155","https://openalex.org/W1649619740","https://openalex.org/W3213252596","https://openalex.org/W1534006406","https://openalex.org/W2165071883"],"abstract_inverted_index":{"Secondary":[0],"use":[1,94],"of":[2,36,46,57,66,82,95,115,155,160,228],"clinical":[3],"structured":[4,96],"data":[5,47,116,124,138,229],"takes":[6,234],"an":[7,27,43,72,235],"important":[8,28,236],"place":[9,65,237],"in":[10,22,49,118,208,238],"healthcare":[11],"research.":[12],"It":[13],"was":[14],"first":[15,199],"described":[16],"by":[17,92,194],"Fayyad":[18],"as":[19],"\"knowledge":[20],"discovery":[21],"databases\".":[23],"Feature":[24],"extraction":[25,221],"is":[26,75,107,123,142,147,165],"phase":[29],"but":[30],"received":[31],"little":[32],"attention.":[33],"The":[34,169],"objectives":[35,56],"this":[37],"paper":[38],"are:":[39],"1)":[40,110],"to":[41,52,62,135,205],"propose":[42,112],"updated":[44,73],"representation":[45,74],"reuse":[48,117],"healthcare,":[50],"2)":[51,168],"illustrate":[53],"methods":[54],"and":[55,60,88,149,158,182,200,214,249],"feature":[58,143,239],"extraction,":[59,240],"3)":[61,188],"discuss":[63],"the":[64,190,198],"domain-specific":[67,186],"knowledge.":[68,187],"MATERIAL":[69],"AND":[70],"METHODS:":[71],"proposed.":[76],"Then,":[77],"a":[78,99,113,137,223],"case":[79,170],"study":[80,171],"consists":[81,154],"automatically":[83],"identifying":[84],"acute":[85],"renal":[86],"failure":[87],"discovering":[89],"risk":[90],"factors,":[91],"secondary":[93],"data.":[97],"Finally,":[98],"literature":[100],"review":[101],"published":[102],"par":[103],"Meystre":[104,195],"et":[105,196],"al.":[106],"analyzed.":[108],"RESULTS:":[109],"we":[111],"description":[114],"5":[119,164],"phases.":[120],"Phase":[121,140,145,152,163],"1":[122],"preprocessing":[125],"(cleansing,":[126],"linkage,":[127],"terminological":[128],"alignment,":[129],"unit":[130],"conversions,":[131],"deidentification),":[132],"it":[133],"enables":[134],"construct":[136],"warehouse.":[139],"2":[141],"extraction.":[144],"3":[146],"statistical":[148,161],"graphical":[150],"mining.":[151],"4":[153],"expert":[156],"filtering":[157],"reorganization":[159],"results.":[162],"decision":[166],"making.":[167],"illustrates":[172],"how":[173],"time-dependent":[174],"features":[175,220],"can":[176],"be":[177],"extracted":[178],"from":[179],"laboratory":[180],"results":[181],"drug":[183],"administrations,":[184],"using":[185],"Among":[189],"200":[191],"papers":[192],"cited":[193],"al.,":[197],"last":[201],"authors":[202],"were":[203],"affiliated":[204],"health":[206,250],"institutions":[207],"74%":[209],"(68%":[210],"for":[211,216],"methodological":[212],"papers,":[213],"79%":[215],"applied":[217],"papers).":[218],"DISCUSSION:":[219],"has":[222],"major":[224],"impact":[225],"on":[226],"success":[227],"reuse.":[230],"Specific":[231],"knowledge-based":[232],"reasoning":[233],"which":[241],"requires":[242],"tight":[243],"collaboration":[244],"between":[245],"computer":[246],"scientists,":[247],"statisticians,":[248],"professionals.":[251]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}