{"id":"https://openalex.org/W2798319138","doi":"https://doi.org/10.3233/978-1-61499-852-5-710","title":"Automatic Annotation of French Medical Narratives with SNOMED CT Concepts","display_name":"Automatic Annotation of French Medical Narratives with SNOMED CT Concepts","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2798319138","doi":"https://doi.org/10.3233/978-1-61499-852-5-710","mag":"2798319138","pmid":"https://pubmed.ncbi.nlm.nih.gov/29678053"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-852-5-710","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-852-5-710","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://archive-ouverte.unige.ch/unige:106599","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083072992","display_name":"Christophe Gaudet-Blavignac","orcid":"https://orcid.org/0000-0001-6527-5898"},"institutions":[{"id":"https://openalex.org/I4210152502","display_name":"University Hospitals Geneva Medical Center","ror":"https://ror.org/04t6zb108","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799343972","https://openalex.org/I4210152502"]},{"id":"https://openalex.org/I6312358","display_name":"Geneva College","ror":"https://ror.org/02vb7sj25","country_code":"US","type":"education","lineage":["https://openalex.org/I6312358"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gaudet-Blavignac Christophe","raw_affiliation_strings":["Division of Medical Information Sciences, Geneva University Hospitals and University of Geneva"],"affiliations":[{"raw_affiliation_string":"Division of Medical Information Sciences, Geneva University Hospitals and University of Geneva","institution_ids":["https://openalex.org/I4210152502","https://openalex.org/I6312358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012347958","display_name":"Vasiliki Foufi","orcid":"https://orcid.org/0000-0002-8625-0734"},"institutions":[{"id":"https://openalex.org/I4210152502","display_name":"University Hospitals Geneva Medical Center","ror":"https://ror.org/04t6zb108","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799343972","https://openalex.org/I4210152502"]},{"id":"https://openalex.org/I6312358","display_name":"Geneva College","ror":"https://ror.org/02vb7sj25","country_code":"US","type":"education","lineage":["https://openalex.org/I6312358"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Foufi Vasiliki","raw_affiliation_strings":["Division of Medical Information Sciences, Geneva University Hospitals and University of Geneva"],"affiliations":[{"raw_affiliation_string":"Division of Medical Information Sciences, Geneva University Hospitals and University of Geneva","institution_ids":["https://openalex.org/I4210152502","https://openalex.org/I6312358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071104145","display_name":"\u00c9ric Wehrli","orcid":null},"institutions":[{"id":"https://openalex.org/I3017417437","display_name":"Laboratoire Dynamique du Langage","ror":"https://ror.org/01fvx3s14","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I188626449","https://openalex.org/I203339264","https://openalex.org/I3017417437"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Wehrli Eric","raw_affiliation_strings":["Laboratoire d'Analyse et de Technologie du Langage, University of Geneva"],"affiliations":[{"raw_affiliation_string":"Laboratoire d'Analyse et de Technologie du Langage, University of Geneva","institution_ids":["https://openalex.org/I3017417437"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016557721","display_name":"Christian Lovis","orcid":"https://orcid.org/0000-0002-2681-8076"},"institutions":[{"id":"https://openalex.org/I4210152502","display_name":"University Hospitals Geneva Medical Center","ror":"https://ror.org/04t6zb108","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799343972","https://openalex.org/I4210152502"]},{"id":"https://openalex.org/I6312358","display_name":"Geneva College","ror":"https://ror.org/02vb7sj25","country_code":"US","type":"education","lineage":["https://openalex.org/I6312358"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lovis Christian","raw_affiliation_strings":["Division of Medical Information Sciences, Geneva University Hospitals and University of Geneva"],"affiliations":[{"raw_affiliation_string":"Division of Medical Information Sciences, Geneva University Hospitals and University of Geneva","institution_ids":["https://openalex.org/I4210152502","https://openalex.org/I6312358"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5083072992"],"corresponding_institution_ids":["https://openalex.org/I4210152502","https://openalex.org/I6312358"],"apc_list":null,"apc_paid":null,"fwci":0.8142,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.74798466,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"247","issue":null,"first_page":"710","last_page":"714"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8260009288787842},{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.8189541101455688},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.7233039140701294},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6751066446304321},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5835273861885071},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5478971004486084},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.5432019233703613},{"id":"https://openalex.org/keywords/syntax","display_name":"Syntax","score":0.5364485383033752},{"id":"https://openalex.org/keywords/systematized-nomenclature-of-medicine","display_name":"Systematized Nomenclature of Medicine","score":0.5256603360176086},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5197293758392334},{"id":"https://openalex.org/keywords/narrative","display_name":"Narrative","score":0.51666259765625},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4732280969619751},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2528860569000244},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.24534818530082703},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.11787360906600952}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8260009288787842},{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.8189541101455688},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.7233039140701294},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6751066446304321},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5835273861885071},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5478971004486084},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.5432019233703613},{"id":"https://openalex.org/C60048249","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntax","level":2,"score":0.5364485383033752},{"id":"https://openalex.org/C44681071","wikidata":"https://www.wikidata.org/wiki/Q4048820","display_name":"Systematized Nomenclature of Medicine","level":4,"score":0.5256603360176086},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5197293758392334},{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.51666259765625},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4732280969619751},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2528860569000244},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.24534818530082703},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.11787360906600952},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D033262","descriptor_name":"Narration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3233/978-1-61499-852-5-710","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-852-5-710","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:29678053","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29678053","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:unige.ch:aou:unige:106599","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:106599","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Building continents of knowledge in Oceans of data: the future of co-created eHealth / A. Ugon et al. (Eds.) (ed.),  (2018) p. 710-714","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"pmh:oai:unige.ch:aou:unige:106599","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:106599","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Building continents of knowledge in Oceans of data: the future of co-created eHealth / A. Ugon et al. (Eds.) (ed.),  (2018) p. 710-714","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.8500000238418579}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323830","display_name":"Universit\u00e9 de Gen\u00e8ve","ror":"https://ror.org/01swzsf04"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W180532934","https://openalex.org/W354445564","https://openalex.org/W1536678384","https://openalex.org/W1550258693","https://openalex.org/W2104321900","https://openalex.org/W2111437636","https://openalex.org/W2117308962","https://openalex.org/W2121131527","https://openalex.org/W2275934112","https://openalex.org/W2467000763","https://openalex.org/W2736852218","https://openalex.org/W4254830244"],"related_works":["https://openalex.org/W2581432157","https://openalex.org/W983237315","https://openalex.org/W4386159309","https://openalex.org/W4295077997","https://openalex.org/W4384914659","https://openalex.org/W2419080317","https://openalex.org/W328302119","https://openalex.org/W2042499546","https://openalex.org/W2202817416","https://openalex.org/W2026282251"],"abstract_inverted_index":{"Medical":[0],"data":[1,12,15,19,25],"is":[2,7,20,34,60,64],"multimodal.":[3],"In":[4,37],"particular,":[5],"it":[6],"composed":[8],"of":[9,23,42,47,75,86],"both":[10],"structured":[11],"and":[13,31,81,100],"narrative":[14],"(free":[16],"text).":[17],"Narrative":[18],"a":[21,67],"type":[22],"unstructured":[24],"that,":[26],"although":[27],"containing":[28],"valuable":[29],"semantic":[30,84],"conceptual":[32],"information,":[33],"rarely":[35],"reused.":[36],"order":[38],"to":[39],"assure":[40],"interoperability":[41],"medical":[43],"data,":[44],"automatic":[45],"annotation":[46,77],"free":[48],"text":[49],"with":[50],"SNOMED":[51],"CT":[52],"concepts":[53],"via":[54],"Natural":[55],"Language":[56],"Processing":[57],"(NLP)":[58],"tools":[59],"proposed.":[61],"This":[62],"task":[63],"performed":[65],"using":[66],"hybrid":[68,93],"multilingual":[69],"syntactic":[70],"parser.":[71],"A":[72],"preliminary":[73],"evaluation":[74],"the":[76],"shows":[78],"encouraging":[79],"results":[80],"confirms":[82],"that":[83],"enrichment":[85],"patient-related":[87],"narratives":[88],"can":[89],"be":[90],"accomplished":[91],"by":[92],"NLP":[94],"systems,":[95],"heavily":[96],"based":[97],"on":[98],"syntax":[99],"lexicosemantic":[101],"resources.":[102]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}