{"id":"https://openalex.org/W2794692603","doi":"https://doi.org/10.3233/978-1-61499-843-3-423","title":"Characterization of Genomic Data Using Graph Databases","display_name":"Characterization of Genomic Data Using Graph Databases","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2794692603","doi":"https://doi.org/10.3233/978-1-61499-843-3-423","mag":"2794692603"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-843-3-423","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-843-3-423","pdf_url":null,"source":{"id":"https://openalex.org/S4210175178","display_name":"Advances in parallel computing","issn_l":"0927-5452","issn":["0927-5452","1879-808X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Parallel Computing","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049391887","display_name":"Mattia D\u2019Antonio","orcid":"https://orcid.org/0000-0003-2470-9797"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"D'Antonio Mattia","raw_affiliation_strings":["University of Bari Aldo Moro, Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Bari Aldo Moro, Bari, Italy","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"middle","author":{"id":null,"display_name":"D'Onorio De Meo Paolo","orcid":null},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"D'Onorio De Meo Paolo","raw_affiliation_strings":["Sapienza University of Rome, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sapienza University of Rome, Rome, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007331722","display_name":"Claudio Cacciari","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cacciari Claudio","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5046146028","display_name":"Giuseppe Fiameni","orcid":"https://orcid.org/0000-0001-8687-6609"},"institutions":[{"id":"https://openalex.org/I122346577","display_name":"University of Modena and Reggio Emilia","ror":"https://ror.org/02d4c4y02","country_code":"IT","type":"education","lineage":["https://openalex.org/I122346577"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Fiameni Giuseppe","raw_affiliation_strings":["University of Modena and Reggio Emilia, Modena, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Modena and Reggio Emilia, Modena, Italy","institution_ids":["https://openalex.org/I122346577"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.411,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.57863812,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":93},"biblio":{"volume":null,"issue":null,"first_page":"423","last_page":"432"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9739999771118164,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9736999869346619,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5730447769165039},{"id":"https://openalex.org/keywords/graph-database","display_name":"Graph database","score":0.5572496056556702},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5212079286575317},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.41772955656051636},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.15256273746490479}],"concepts":[{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5730447769165039},{"id":"https://openalex.org/C176225458","wikidata":"https://www.wikidata.org/wiki/Q595971","display_name":"Graph database","level":3,"score":0.5572496056556702},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5212079286575317},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.41772955656051636},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.15256273746490479}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-61499-843-3-423","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-843-3-423","pdf_url":null,"source":{"id":"https://openalex.org/S4210175178","display_name":"Advances in parallel computing","issn_l":"0927-5452","issn":["0927-5452","1879-808X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Advances in Parallel Computing","raw_type":"book-chapter"},{"id":"mag:2794692603","is_oa":false,"landing_page_url":"https://dblp.uni-trier.de/db/conf/parco/parco2017.html#DAntonioMCF17","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Parallel Computing","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W3115442681"],"abstract_inverted_index":{"The":[0,100],"amount":[1],"of":[2,25,39,58,71,88,102,110,181,203,225,228,236],"genomic":[3,103],"data":[4,35,104,145,182,238],"produced":[5],"by":[6,21],"DNA-sequencing":[7],"is":[8,125],"growing":[9],"at":[10,55],"an":[11],"unprecedented":[12],"rate":[13],"due":[14,106,199],"to":[15,83,94,107,115,166,195,200],"the":[16,22,97,108,118,192,201,204,221],"ever":[17],"greater":[18],"throughput":[19],"provided":[20],"new":[23],"generation":[24],"genome":[26],"sequencing":[27],"(NGS)":[28],"platforms.":[29],"To":[30],"understand":[31,96],"and":[32,41,51,73,117,132,135,144,163,169,223,232],"interpret":[33],"biological":[34,50,123,229,237],"a":[36,85,141,217],"huge":[37],"number":[38,109],"metadata":[40,46],"annotations":[42],"are":[43,81,190,239],"required.":[44],"Genomic":[45],"include":[47],"very":[48],"heterogeneous":[49],"clinical":[52,74],"attributes":[53],"gathered":[54],"different":[56],"levels":[57,227],"details":[59],"such":[60],"as":[61,242],"diseases,":[62],"genes,":[63],"proteins,":[64],"interactions,":[65],"pathways":[66],"but":[67],"also":[68,215],"phenotypic":[69],"characterization":[70],"patients":[72],"evidence":[75],"or":[76],"diagnosis.":[77],"All":[78],"these":[79],"information":[80,124,230],"required":[82],"draw":[84],"comprehensive":[86],"picture":[87],"many":[89],"underlying":[90],"phenomenons,":[91],"thus":[92],"contributing":[93],"scientifically":[95],"observed":[98],"data.":[99],"complexity":[101],"arises":[105],"involved":[111],"entities":[112],"(from":[113],"millions":[114],"billions)":[116],"complex":[119],"relationships":[120],"between":[121],"them;":[122],"typically":[126],"highly":[127],"connected,":[128],"not":[129],"uniform,":[130],"semi-structured":[131],"unpredictable.":[133],"Relationships":[134],"connections":[136,212],"may":[137],"be":[138,147],"stored":[139],"in":[140,210],"relational":[142,175],"database":[143],"can":[146],"extracted":[148],"adopting":[149],"traversal-type":[150],"queries":[151],"implying":[152],"joins.":[153],"Nevertheless":[154],"joins":[155],"with":[156],"large":[157],"tables":[158],"easily":[159],"become":[160],"too":[161],"cumbersome":[162],"computationally":[164],"expensive":[165],"design,":[167],"execute":[168],"maintain.":[170],"This":[171],"critical":[172],"aspect":[173],"makes":[174],"databases":[176,189],"non-suitable":[177],"for":[178,220],"this":[179],"kind":[180],"operations.":[183],"Studies":[184],"already":[185,240],"suggested":[186],"that":[187],"graph":[188],"among":[191],"best":[193],"choices":[194],"explore":[196],"linked":[197],"data,":[198],"design":[202],"core":[205],"engine":[206],"which":[207],"optimizes":[208],"performance":[209],"exploring":[211],"[1].":[213],"They":[214],"provide":[216],"flexible":[218],"solution":[219],"integration":[222],"exploration":[224],"multiple":[226],"[2]":[231],"some":[233],"specific":[234],"sets":[235],"structured":[241],"graphs":[243],"[3].":[244]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2018-04-06T00:00:00"}
