{"id":"https://openalex.org/W2785587266","doi":"https://doi.org/10.3233/978-1-61499-830-3-351","title":"Extracting Sexual Trauma Mentions from Electronic Medical Notes Using Natural Language Processing","display_name":"Extracting Sexual Trauma Mentions from Electronic Medical Notes Using Natural Language Processing","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2785587266","doi":"https://doi.org/10.3233/978-1-61499-830-3-351","mag":"2785587266","pmid":"https://pubmed.ncbi.nlm.nih.gov/29295114"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-830-3-351","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-830-3-351","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007564242","display_name":"Guy Divita","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089864","display_name":"VA Salt Lake City Healthcare System","ror":"https://ror.org/007fyq698","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210089864","https://openalex.org/I4210113540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Divita Guy","raw_affiliation_strings":["VA Salt Lake City Health Care System, Salt Lake City, Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VA Salt Lake City Health Care System, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I4210089864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030874133","display_name":"Emily Brignone","orcid":"https://orcid.org/0000-0001-7138-4775"},"institutions":[{"id":"https://openalex.org/I4210089864","display_name":"VA Salt Lake City Healthcare System","ror":"https://ror.org/007fyq698","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210089864","https://openalex.org/I4210113540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brignone Emily","raw_affiliation_strings":["VA Salt Lake City Health Care System, Salt Lake City, Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VA Salt Lake City Health Care System, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I4210089864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009323063","display_name":"Marjorie E. Carter","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089864","display_name":"VA Salt Lake City Healthcare System","ror":"https://ror.org/007fyq698","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210089864","https://openalex.org/I4210113540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carter Marjorie E.","raw_affiliation_strings":["VA Salt Lake City Health Care System, Salt Lake City, Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VA Salt Lake City Health Care System, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I4210089864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102801397","display_name":"Ying Suo","orcid":"https://orcid.org/0000-0002-3563-5300"},"institutions":[{"id":"https://openalex.org/I4210089864","display_name":"VA Salt Lake City Healthcare System","ror":"https://ror.org/007fyq698","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210089864","https://openalex.org/I4210113540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suo Ying","raw_affiliation_strings":["VA Salt Lake City Health Care System, Salt Lake City, Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VA Salt Lake City Health Care System, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I4210089864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032331147","display_name":"Rebecca K. Blais","orcid":"https://orcid.org/0000-0002-2483-1576"},"institutions":[{"id":"https://openalex.org/I4210089864","display_name":"VA Salt Lake City Healthcare System","ror":"https://ror.org/007fyq698","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210089864","https://openalex.org/I4210113540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Blais Rebecca K.","raw_affiliation_strings":["VA Salt Lake City Health Care System, Salt Lake City, Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VA Salt Lake City Health Care System, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I4210089864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078072232","display_name":"Matthew H. Samore","orcid":"https://orcid.org/0000-0002-4862-9196"},"institutions":[{"id":"https://openalex.org/I4210089864","display_name":"VA Salt Lake City Healthcare System","ror":"https://ror.org/007fyq698","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210089864","https://openalex.org/I4210113540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samore Matthew H.","raw_affiliation_strings":["VA Salt Lake City Health Care System, Salt Lake City, Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VA Salt Lake City Health Care System, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I4210089864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012060586","display_name":"Jamison D. Fargo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089864","display_name":"VA Salt Lake City Healthcare System","ror":"https://ror.org/007fyq698","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210089864","https://openalex.org/I4210113540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fargo Jamison D.","raw_affiliation_strings":["VA Salt Lake City Health Care System, Salt Lake City, Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VA Salt Lake City Health Care System, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I4210089864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005755665","display_name":"Adi V. Gundlapalli","orcid":"https://orcid.org/0000-0002-7423-7903"},"institutions":[{"id":"https://openalex.org/I4210089864","display_name":"VA Salt Lake City Healthcare System","ror":"https://ror.org/007fyq698","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1322918889","https://openalex.org/I2799886695","https://openalex.org/I4210089864","https://openalex.org/I4210113540"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gundlapalli Adi V.","raw_affiliation_strings":["VA Salt Lake City Health Care System, Salt Lake City, Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"VA Salt Lake City Health Care System, Salt Lake City, Utah, USA","institution_ids":["https://openalex.org/I4210089864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4210089864"],"apc_list":null,"apc_paid":null,"fwci":1.1303,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.83096509,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"245","issue":null,"first_page":"351","last_page":"355"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9477999806404114,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9477999806404114,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lexicon","display_name":"Lexicon","score":0.6336907744407654},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.6080809831619263},{"id":"https://openalex.org/keywords/text-messaging","display_name":"Text messaging","score":0.5758934020996094},{"id":"https://openalex.org/keywords/reproductive-health","display_name":"Reproductive health","score":0.5273367166519165},{"id":"https://openalex.org/keywords/electronic-medical-record","display_name":"Electronic medical record","score":0.4700806438922882},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4653317332267761},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.44816210865974426},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44115522503852844},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.4180504083633423},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.391045480966568},{"id":"https://openalex.org/keywords/medical-emergency","display_name":"Medical emergency","score":0.3786477744579315},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37402990460395813},{"id":"https://openalex.org/keywords/internet-privacy","display_name":"Internet privacy","score":0.24763119220733643}],"concepts":[{"id":"https://openalex.org/C2778121359","wikidata":"https://www.wikidata.org/wiki/Q8096","display_name":"Lexicon","level":2,"score":0.6336907744407654},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.6080809831619263},{"id":"https://openalex.org/C3018949938","wikidata":"https://www.wikidata.org/wiki/Q17166101","display_name":"Text messaging","level":2,"score":0.5758934020996094},{"id":"https://openalex.org/C121752807","wikidata":"https://www.wikidata.org/wiki/Q1981388","display_name":"Reproductive health","level":3,"score":0.5273367166519165},{"id":"https://openalex.org/C3018060332","wikidata":"https://www.wikidata.org/wiki/Q10871684","display_name":"Electronic medical record","level":2,"score":0.4700806438922882},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4653317332267761},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.44816210865974426},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44115522503852844},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.4180504083633423},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.391045480966568},{"id":"https://openalex.org/C545542383","wikidata":"https://www.wikidata.org/wiki/Q2751242","display_name":"Medical emergency","level":1,"score":0.3786477744579315},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37402990460395813},{"id":"https://openalex.org/C108827166","wikidata":"https://www.wikidata.org/wiki/Q175975","display_name":"Internet privacy","level":1,"score":0.24763119220733643},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-61499-830-3-351","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-830-3-351","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:29295114","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29295114","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5400000214576721,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2140536630","https://openalex.org/W3195005284","https://openalex.org/W2391730868","https://openalex.org/W4394659737","https://openalex.org/W2759814045","https://openalex.org/W2118055728","https://openalex.org/W4399756845","https://openalex.org/W2736760277","https://openalex.org/W2127401265","https://openalex.org/W2412722071"],"abstract_inverted_index":{"Patient":[0],"history":[1],"of":[2,6,26,33,54,108,122],"sexual":[3,27,75,112],"trauma":[4,28,76,113],"is":[5],"clinical":[7],"relevance":[8],"to":[9,49,73],"healthcare":[10],"providers":[11],"as":[12],"survivors":[13],"face":[14],"adverse":[15],"health-related":[16],"outcomes.":[17],"This":[18],"paper":[19],"describes":[20],"a":[21,51,87,120],"method":[22],"for":[23,42,59,91,110,134],"identifying":[24,111],"mentions":[25,77,114],"within":[29],"the":[30,116,125],"free":[31,117],"text":[32,118],"electronic":[34,55],"medical":[35,56,67],"notes.":[36],"A":[37],"natural":[38],"language":[39],"processing":[40],"pipeline":[41],"information":[43],"extraction":[44],"was":[45,71],"developed":[46,90],"and":[47,78,119],"scaled":[48],"handle":[50],"large":[52],"corpus":[53],"notes":[57],"used":[58,72],"this":[60,92],"study":[61],"from":[62,115,136],"US":[63],"Veterans":[64],"Health":[65],"Administration":[66],"facilities.":[68],"The":[69,130],"tool":[70],"identify":[74],"create":[79],"snippets":[80,95],"around":[81],"every":[82],"asserted":[83],"mention":[84],"based":[85],"on":[86],"domain-specific":[88],"lexicon":[89],"purpose.":[93],"All":[94],"were":[96],"evaluated":[97],"by":[98],"trained":[99],"human":[100],"reviewers.":[101],"An":[102],"overall":[103],"positive":[104],"predictive":[105],"value":[106],"(PPV)":[107],"0.90":[109],"PPV":[121],"0.71":[123],"at":[124],"patient":[126],"level":[127],"are":[128,132],"reported.":[129],"metrics":[131],"superior":[133],"records":[135],"female":[137],"patients.":[138]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}