{"id":"https://openalex.org/W2759338738","doi":"https://doi.org/10.3233/978-1-61499-808-2-37","title":"Standards-Based Procedural Phenotyping: The Arden Syntax on i2b2","display_name":"Standards-Based Procedural Phenotyping: The Arden Syntax on i2b2","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2759338738","doi":"https://doi.org/10.3233/978-1-61499-808-2-37","mag":"2759338738","pmid":"https://pubmed.ncbi.nlm.nih.gov/28883166"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-808-2-37","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-808-2-37","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067809875","display_name":"Sebastian Mate","orcid":"https://orcid.org/0000-0002-1389-3384"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Mate Sebastian","raw_affiliation_strings":["Medical Informatics, Univ. of Erlangen-N\u00fcrnberg, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Medical Informatics, Univ. of Erlangen-N\u00fcrnberg, Erlangen, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070174775","display_name":"Ixchel Castellanos","orcid":"https://orcid.org/0000-0001-7091-5423"},"institutions":[{"id":"https://openalex.org/I4210088053","display_name":"Universit\u00e4tsklinikum Erlangen","ror":"https://ror.org/0030f2a11","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210088053"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Castellanos Ixchel","raw_affiliation_strings":["Department of Anesthesiology, University Hospital Erlangen, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Anesthesiology, University Hospital Erlangen, Erlangen, Germany","institution_ids":["https://openalex.org/I4210088053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072067248","display_name":"Thomas Ganslandt","orcid":"https://orcid.org/0000-0001-6864-8936"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ganslandt Thomas","raw_affiliation_strings":["Center for Medical Information and Communication, University Hospital Erlangen, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Medical Information and Communication, University Hospital Erlangen, Erlangen, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052931994","display_name":"Hans\u2010Ulrich Prokosch","orcid":"https://orcid.org/0000-0001-6200-753X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Prokosch Hans-Ulrich","raw_affiliation_strings":["Medical Informatics, Univ. of Erlangen-N\u00fcrnberg, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Medical Informatics, Univ. of Erlangen-N\u00fcrnberg, Erlangen, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002299736","display_name":"Stefan Kraus","orcid":"https://orcid.org/0000-0001-8465-7103"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kraus Stefan","raw_affiliation_strings":["Medical Informatics, Univ. of Erlangen-N\u00fcrnberg, Erlangen, Germany"],"affiliations":[{"raw_affiliation_string":"Medical Informatics, Univ. of Erlangen-N\u00fcrnberg, Erlangen, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067809875"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.4715,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.87946271,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"243","issue":null,"first_page":"37","last_page":"41"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13248","display_name":"Healthcare Technology and Patient Monitoring","score":0.9648000001907349,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T13248","display_name":"Healthcare Technology and Patient Monitoring","score":0.9648000001907349,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9283999800682068,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.9240000247955322,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7659956216812134},{"id":"https://openalex.org/keywords/syntax","display_name":"Syntax","score":0.5988307595252991},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.47337859869003296},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4418228268623352},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4384937882423401},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.4384486973285675},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.4275110960006714},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4137207269668579},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08544006943702698},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.077291339635849}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7659956216812134},{"id":"https://openalex.org/C60048249","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntax","level":2,"score":0.5988307595252991},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.47337859869003296},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4418228268623352},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4384937882423401},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.4384486973285675},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.4275110960006714},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4137207269668579},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08544006943702698},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.077291339635849},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010361","descriptor_name":"Patients","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010361","descriptor_name":"Patients","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010361","descriptor_name":"Patients","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015331","descriptor_name":"Cohort Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-61499-808-2-37","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-808-2-37","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:28883166","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28883166","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6899999976158142,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4388713123","https://openalex.org/W2397677514","https://openalex.org/W2914293784","https://openalex.org/W2407382301","https://openalex.org/W1495820741","https://openalex.org/W4323056170","https://openalex.org/W2401910071","https://openalex.org/W2189429352","https://openalex.org/W4302329558","https://openalex.org/W1971571384"],"abstract_inverted_index":{"Phenotyping,":[0],"or":[1],"the":[2,68,94,101,119],"identification":[3],"of":[4,67,96,121],"patient":[5],"cohorts,":[6],"is":[7],"a":[8,79],"recurring":[9],"challenge":[10],"in":[11],"medical":[12,53],"informatics.":[13],"While":[14],"there":[15],"are":[16],"open":[17,87],"source":[18,88],"tools":[19],"such":[20],"as":[21],"i2b2":[22,84],"that":[23],"address":[24],"this":[25,60],"problem":[26],"by":[27],"providing":[28],"user-friendly":[29,123],"querying":[30],"interfaces,":[31],"these":[32],"platforms":[33],"lack":[34],"semantic":[35],"expressiveness":[36,129],"to":[37,82,109],"model":[38],"complex":[39],"phenotyping":[40,107],"algorithms.":[41],"The":[42],"Arden":[43,69,89],"Syntax":[44,70],"provides":[45],"procedural":[46,128],"programming":[47],"language":[48,65],"construct,":[49],"designed":[50],"specifically":[51],"for":[52,74],"decision":[54],"support":[55],"and":[56,126],"knowledge":[57],"transfer.":[58],"In":[59],"work,":[61],"we":[62,99,116],"investigate":[63],"how":[64,118],"constructs":[66],"can":[71],"be":[72],"used":[73,100],"generic":[75],"phenotyping.":[76,132],"We":[77],"implemented":[78],"prototypical":[80],"tool":[81,102],"integrate":[83],"with":[85,104],"an":[86,105],"execution":[90],"environment.":[91],"To":[92],"demonstrate":[93],"applicability":[95],"our":[97],"approach,":[98],"together":[103],"Arden-based":[106],"algorithm":[108],"derive":[110],"statistics":[111],"about":[112],"ICU-acquired":[113],"hypernatremia.":[114],"Finally,":[115],"discuss":[117],"combination":[120],"i2b2's":[122],"cohort":[124],"pre-selection":[125],"Arden's":[127],"could":[130],"benefit":[131]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
