{"id":"https://openalex.org/W2756903324","doi":"https://doi.org/10.3233/978-1-61499-800-6-233","title":"Data Based Feature Identification of Polymorphic Functional Marker from Transcriptome Comparison","display_name":"Data Based Feature Identification of Polymorphic Functional Marker from Transcriptome Comparison","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2756903324","doi":"https://doi.org/10.3233/978-1-61499-800-6-233","mag":"2756903324"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-800-6-233","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-800-6-233","pdf_url":null,"source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103781316","display_name":"Cin-Han Yang","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Yang Cin-Han","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Pai Tun-Wen","orcid":null},"institutions":[{"id":"https://openalex.org/I153512688","display_name":"National Taiwan Ocean University","ror":"https://ror.org/03bvvnt49","country_code":"TW","type":"education","lineage":["https://openalex.org/I153512688"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Pai Tun-Wen","raw_affiliation_strings":["National Taiwan Ocean University, Keelung, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Taiwan Ocean University, Keelung, Taiwan","institution_ids":["https://openalex.org/I153512688"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Chen Ronshan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chen Ronshan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5066741846","display_name":"Hsin\u2010Yiu Chou","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chou Hsin-Yiu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5103781316"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13747141,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.7188000082969666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.7188000082969666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7027000188827515,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7363530397415161},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6623952388763428},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5595688223838806},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.43210598826408386},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40067723393440247},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3469563126564026},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32832688093185425},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3196601867675781},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2558926045894623},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12340468168258667},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06858062744140625},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.03711158037185669}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7363530397415161},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6623952388763428},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5595688223838806},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.43210598826408386},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40067723393440247},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3469563126564026},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32832688093185425},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3196601867675781},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2558926045894623},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12340468168258667},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06858062744140625},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.03711158037185669},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3233/978-1-61499-800-6-233","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-800-6-233","pdf_url":null,"source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2028462563","https://openalex.org/W2982720988","https://openalex.org/W4388725868","https://openalex.org/W2104762330","https://openalex.org/W4379374180","https://openalex.org/W2523545060","https://openalex.org/W4229998356","https://openalex.org/W4311517665"],"abstract_inverted_index":{"Next":[0],"Generation":[1],"Sequencing":[2],"technology":[3],"has":[4],"become":[5],"an":[6,132],"efficient":[7,117],"approach":[8],"for":[9,19,61,82,134,193],"analyzing":[10],"functional":[11,65,164],"genomics":[12],"and":[13,36,51,64,73,78,91,101,116,150,173],"facilitates":[14],"discovery":[15],"of":[16,76,88,119,127,146,206],"molecular":[17],"biomarkers":[18],"various":[20,207],"biological":[21],"applications.":[22],"This":[23],"study":[24],"is":[25],"aim":[26],"to":[27],"discover":[28],"all":[29,174],"simple":[30],"sequence":[31],"repeat":[32],"(SSR)":[33],"biomarker":[34,66],"candidates":[35],"associated":[37,136],"genetic":[38,197,199],"functions":[39],"from":[40,56,96],"two":[41,46,98,183],"different":[42,154,184],"tilapia":[43,99],"strains.":[44],"The":[45],"transcriptome":[47,62],"datasets,":[48],"Nile":[49],"Tilapia":[50],"Mozambique":[52],"Tilapia,":[53],"were":[54,94,103],"retrieved":[55],"the":[57,125,157,182],"public":[58],"SRA":[59],"database":[60],"assembly":[63],"discovery.":[67],"We":[68],"adopted":[69],"Gene":[70],"Ontology":[71],"(GO)":[72],"Kyoto":[74],"Encyclopedia":[75],"Genes":[77],"Genomes":[79],"(KEGG)":[80],"databases":[81],"gene":[83,158,167,202],"function":[84,145],"annotations.":[85],"A":[86],"total":[87],"116,781":[89],"SSRs":[90,93,155,177],"126,324":[92],"identified":[95,180],"these":[97],"strains,":[100],"there":[102],"31,950":[104],"SSR":[105,137,189],"variations":[106],"could":[107,178],"be":[108,170,179],"detected":[109],"within":[110,156],"annotated":[111,143],"genes.":[112],"To":[113],"illustrate":[114],"effective":[115],"performance":[118],"our":[120],"proposed":[121],"system,":[122],"we":[123],"used":[124],"keywords":[126],"“skeletal":[128],"system":[129,148],"development”":[130],"as":[131],"example":[133],"discovering":[135],"markers.":[138],"There":[139],"are":[140,191],"three":[141],"genes":[142],"with":[144],"skeletal":[147],"development,":[149],"which":[151],"possess":[152],"5":[153],"sequences.":[159],"Under":[160],"such":[161],"a":[162,166],"particular":[163],"constraint,":[165],"cluster":[168],"can":[169],"automatically":[171],"defined":[172],"linked":[175,188],"polymorphic":[176],"between":[181],"species.":[185],"These":[186],"identify":[187],"markers":[190],"important":[192],"further":[194],"analysis":[195],"on":[196],"regulation,":[198],"disease":[200],"detection,":[201],"therapy,":[203],"or":[204],"cultivation":[205],"agricultural":[208],"products.":[209]},"counts_by_year":[],"updated_date":"2026-05-21T09:19:25.381259","created_date":"2017-10-06T00:00:00"}