{"id":"https://openalex.org/W2507623806","doi":"https://doi.org/10.3233/978-1-61499-678-1-384","title":"Suggesting Missing Relations in Biomedical Ontologies Based on Lexical Regularities","display_name":"Suggesting Missing Relations in Biomedical Ontologies Based on Lexical Regularities","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2507623806","doi":"https://doi.org/10.3233/978-1-61499-678-1-384","mag":"2507623806","pmid":"https://pubmed.ncbi.nlm.nih.gov/27577409"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-678-1-384","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-678-1-384","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018327800","display_name":"Manuel Quesada-Mart\u00ednez","orcid":"https://orcid.org/0000-0003-0487-308X"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Quesada-Martínez Manuel","raw_affiliation_strings":["Facultad de Inform\u00e1tica, Universidad de Murcia, IMIB-Arrixaca, CP 30100 Murcia"],"affiliations":[{"raw_affiliation_string":"Facultad de Inform\u00e1tica, Universidad de Murcia, IMIB-Arrixaca, CP 30100 Murcia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086790858","display_name":"Jesualdo Tom\u00e1s Fern\u00e1ndez\u2010Breis","orcid":"https://orcid.org/0000-0002-7558-2880"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fernández-Breis Jesualdo Tomás","raw_affiliation_strings":["Facultad de Inform\u00e1tica, Universidad de Murcia, IMIB-Arrixaca, CP 30100 Murcia"],"affiliations":[{"raw_affiliation_string":"Facultad de Inform\u00e1tica, Universidad de Murcia, IMIB-Arrixaca, CP 30100 Murcia","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101580276","display_name":"Daniel Karlsson","orcid":"https://orcid.org/0009-0004-6053-3324"},"institutions":[{"id":"https://openalex.org/I102134673","display_name":"Link\u00f6ping University","ror":"https://ror.org/05ynxx418","country_code":"SE","type":"education","lineage":["https://openalex.org/I102134673"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Karlsson Daniel","raw_affiliation_strings":["Department of Biomedical Engineering, Link\u00f6ping University, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Link\u00f6ping University, Sweden","institution_ids":["https://openalex.org/I102134673"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5018327800"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.5743,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.82775679,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"228","issue":null,"first_page":"384","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12881","display_name":"linguistics and terminology studies","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.9509718418121338},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8199272751808167},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.7468910217285156},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6958454847335815},{"id":"https://openalex.org/keywords/axiom","display_name":"Axiom","score":0.6957913637161255},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5718384981155396},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5679131746292114},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5448716282844543},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4911048412322998},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.47425949573516846},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.46812406182289124},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44799676537513733},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.3354033827781677},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.31293341517448425},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.2504907250404358},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.23321449756622314},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.1934565305709839},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.12331810593605042},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11516347527503967},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.061775803565979004}],"concepts":[{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.9509718418121338},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8199272751808167},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.7468910217285156},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6958454847335815},{"id":"https://openalex.org/C167729594","wikidata":"https://www.wikidata.org/wiki/Q17736","display_name":"Axiom","level":2,"score":0.6957913637161255},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5718384981155396},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5679131746292114},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5448716282844543},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4911048412322998},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.47425949573516846},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.46812406182289124},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44799676537513733},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.3354033827781677},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.31293341517448425},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.2504907250404358},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.23321449756622314},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.1934565305709839},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.12331810593605042},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11516347527503967},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.061775803565979004},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001024","descriptor_name":"Aortic Valve Stenosis","qualifier_ui":"Q000151","qualifier_name":"congenital","is_major_topic":false},{"descriptor_ui":"D001024","descriptor_name":"Aortic Valve Stenosis","qualifier_ui":"Q000151","qualifier_name":"congenital","is_major_topic":false},{"descriptor_ui":"D001024","descriptor_name":"Aortic Valve Stenosis","qualifier_ui":"Q000151","qualifier_name":"congenital","is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039061","descriptor_name":"Systematized Nomenclature of Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-61499-678-1-384","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-678-1-384","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:27577409","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27577409","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5899999737739563,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2044298438","https://openalex.org/W2240723216","https://openalex.org/W2186444170","https://openalex.org/W2181479088","https://openalex.org/W2795453480","https://openalex.org/W2037829818","https://openalex.org/W31701444","https://openalex.org/W4206342372","https://openalex.org/W4313525345","https://openalex.org/W4388685083"],"abstract_inverted_index":{"The":[0,28,91],"number":[1],"of":[2,12,18,20,22,32,64,93,96,108,115,153],"biomedical":[3,54],"ontologies":[4,14,44,55],"has":[5],"increased":[6],"significantly":[7],"in":[8,58,70,77,83,88,144],"recent":[9],"years.":[10],"Many":[11],"such":[13],"are":[15,56,66,75,106,111],"the":[16,79,94,97,122,145,164],"result":[17],"efforts":[19],"communities":[21,40],"domain":[23],"experts":[24],"and":[25,30,48,86],"ontology":[26],"engineers.":[27],"development":[29],"application":[31],"quality":[33],"assurance":[34],"(QA)":[35],"methods":[36],"should":[37,127],"help":[38],"these":[39],"to":[41,51,100,136,140],"develop":[42],"useful":[43],"for":[45],"both":[46],"humans":[47],"machines.":[49],"According":[50],"previous":[52],"studies,":[53],"rich":[57,69],"natural":[59,84],"language":[60,85],"content,":[61],"but":[62],"most":[63],"them":[65],"not":[67],"so":[68],"axiomatic":[71,89],"terms.":[72],"Here,":[73,147],"we":[74,148],"interested":[76],"studying":[78],"relation":[80],"between":[81],"content":[82,87],"form.":[90],"analysis":[92],"labels":[95,114],"classes":[98,123],"permits":[99],"identify":[101],"lexical":[102,151],"regularities":[103],"(LRs),":[104],"which":[105,133,158],"sets":[107],"words":[109],"that":[110,121],"shared":[112],"by":[113,163],"different":[116],"classes.":[117],"Our":[118],"assumption":[119],"is":[120,134,159],"exhibiting":[124],"an":[125,138],"LR":[126],"be":[128],"logically":[129],"related":[130],"through":[131],"axioms,":[132],"used":[135],"propose":[137],"algorithm":[139],"detect":[141],"missing":[142],"relations":[143],"ontology.":[146],"analyse":[149],"a":[150],"regularity":[152],"SNOMED":[154,165],"CT,":[155],"congenital":[156],"stenosis,":[157],"reported":[160],"as":[161],"problematic":[162],"CT":[166],"maintenance":[167],"team.":[168]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}