{"id":"https://openalex.org/W2591794093","doi":"https://doi.org/10.3233/978-1-61499-678-1-28","title":"Attempting to Use MetaMap in Clinical Practice: A Feasibility Study on the Identification of Medical Concepts from Italian Clinical Notes","display_name":"Attempting to Use MetaMap in Clinical Practice: A Feasibility Study on the Identification of Medical Concepts from Italian Clinical Notes","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2591794093","doi":"https://doi.org/10.3233/978-1-61499-678-1-28","mag":"2591794093","pmid":"https://pubmed.ncbi.nlm.nih.gov/27577335"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-678-1-28","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-678-1-28","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007691715","display_name":"Emma Chiaramello","orcid":"https://orcid.org/0000-0003-2503-4779"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210100607","display_name":"Institute of Electronics, Computer and Telecommunication Engineering","ror":"https://ror.org/00n4jbh84","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210100607","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Chiaramello Emma","raw_affiliation_strings":["Consiglio Nazionale delle Ricerche (CNR), Istituto di Elettronica e di Ingegneria dell'Informazione e delle Telecomunicazioni (IEIIT), Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Consiglio Nazionale delle Ricerche (CNR), Istituto di Elettronica e di Ingegneria dell'Informazione e delle Telecomunicazioni (IEIIT), Milan, Italy","institution_ids":["https://openalex.org/I4210100607","https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025841474","display_name":"Alessia Paglialonga","orcid":"https://orcid.org/0000-0002-1341-2560"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210100607","display_name":"Institute of Electronics, Computer and Telecommunication Engineering","ror":"https://ror.org/00n4jbh84","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210100607","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paglialonga Alessia","raw_affiliation_strings":["Consiglio Nazionale delle Ricerche (CNR), Istituto di Elettronica e di Ingegneria dell'Informazione e delle Telecomunicazioni (IEIIT), Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Consiglio Nazionale delle Ricerche (CNR), Istituto di Elettronica e di Ingegneria dell'Informazione e delle Telecomunicazioni (IEIIT), Milan, Italy","institution_ids":["https://openalex.org/I4210100607","https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027676232","display_name":"Francesco Pinciroli","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100607","display_name":"Institute of Electronics, Computer and Telecommunication Engineering","ror":"https://ror.org/00n4jbh84","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210100607","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Pinciroli Francesco","raw_affiliation_strings":["Consiglio Nazionale delle Ricerche (CNR), Istituto di Elettronica e di Ingegneria dell'Informazione e delle Telecomunicazioni (IEIIT), Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Consiglio Nazionale delle Ricerche (CNR), Istituto di Elettronica e di Ingegneria dell'Informazione e delle Telecomunicazioni (IEIIT), Milan, Italy","institution_ids":["https://openalex.org/I4210100607","https://openalex.org/I4210155236"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055450049","display_name":"Gabriella Tognola","orcid":"https://orcid.org/0000-0002-2433-449X"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"funder","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210100607","display_name":"Institute of Electronics, Computer and Telecommunication Engineering","ror":"https://ror.org/00n4jbh84","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210100607","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Tognola Gabriella","raw_affiliation_strings":["Consiglio Nazionale delle Ricerche (CNR), Istituto di Elettronica e di Ingegneria dell'Informazione e delle Telecomunicazioni (IEIIT), Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Consiglio Nazionale delle Ricerche (CNR), Istituto di Elettronica e di Ingegneria dell'Informazione e delle Telecomunicazioni (IEIIT), Milan, Italy","institution_ids":["https://openalex.org/I4210100607","https://openalex.org/I4210155236"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5007691715"],"corresponding_institution_ids":["https://openalex.org/I4210100607","https://openalex.org/I4210155236"],"apc_list":null,"apc_paid":null,"fwci":1.5743,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.8509624,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"228","issue":null,"first_page":"28","last_page":"32"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9233999848365784,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7635568380355835},{"id":"https://openalex.org/keywords/clinical-practice","display_name":"Clinical Practice","score":0.7065029740333557},{"id":"https://openalex.org/keywords/medical-practice","display_name":"Medical practice","score":0.5333312153816223},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4091677665710449},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3347930908203125},{"id":"https://openalex.org/keywords/medical-education","display_name":"Medical education","score":0.27118590474128723},{"id":"https://openalex.org/keywords/family-medicine","display_name":"Family medicine","score":0.25207990407943726},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1007135808467865}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7635568380355835},{"id":"https://openalex.org/C2779974597","wikidata":"https://www.wikidata.org/wiki/Q28448986","display_name":"Clinical Practice","level":2,"score":0.7065029740333557},{"id":"https://openalex.org/C2993312423","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medical practice","level":2,"score":0.5333312153816223},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4091677665710449},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3347930908203125},{"id":"https://openalex.org/C509550671","wikidata":"https://www.wikidata.org/wiki/Q126945","display_name":"Medical education","level":1,"score":0.27118590474128723},{"id":"https://openalex.org/C512399662","wikidata":"https://www.wikidata.org/wiki/Q3505712","display_name":"Family medicine","level":1,"score":0.25207990407943726},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1007135808467865},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007558","descriptor_name":"Italy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007558","descriptor_name":"Italy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007558","descriptor_name":"Italy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-61499-678-1-28","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-678-1-28","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:27577335","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27577335","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.75,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2354353034","https://openalex.org/W2351866742","https://openalex.org/W2387251100","https://openalex.org/W2383308316","https://openalex.org/W2414651481","https://openalex.org/W3088497272","https://openalex.org/W2063785764","https://openalex.org/W3031368460"],"abstract_inverted_index":{"This":[0],"study":[1],"assessed":[2],"the":[3,56,109,122,126,145],"feasibility":[4],"of":[5,37,55,125,147],"using":[6,32,119,137],"MetaMap":[7,27,47,104,120,138],"to":[8,28,48,65,80,89,135,153,156],"identify":[9],"medical":[10,62],"concepts":[11,63],"from":[12],"clinical":[13,128,140],"notes":[14],"written":[15],"in":[16,22,42,85,94,139],"Italian.":[17],"We":[18,60],"performed":[19],"two":[20],"experiments:":[21],"\"EXP":[23,43,86,95,99,102],"1\",":[24,87],"we":[25,45,130],"used":[26,46],"annotate":[29],"Italian":[30,38,58,127],"texts":[31],"a":[33],"knowledge":[34],"source":[35],"consisting":[36],"UMLS":[39],"sources":[40],"only;":[41],"2\",":[44],"analyze":[49],"an":[50],"English":[51,123],"unsupervised":[52],"translated":[53],"version":[54],"original":[57],"texts.":[59],"considered":[61],"related":[64],"three":[66],"semantic":[67],"categories:":[68],"\"Disorders\",":[69],"\"Findings\"":[70,113],"and":[71,76,83,88,92,101,114],"\"Symptoms\".":[72,115],"Average":[73],"recall,":[74],"precision":[75],"F-measure":[77],"were":[78],"equal":[79],"0.53,":[81],"0.98":[82],"0.69":[84],"0.75,":[90],"0.95":[91],"0.83":[93],"2\".":[96],"For":[97],"both":[98],"1\"":[100],"2\"":[103],"showed":[105],"better":[106],"performances":[107,132,158],"for":[108,112],"\"Disorders\"":[110],"than":[111],"In":[116],"conclusion,":[117],"when":[118],"with":[121],"translation":[124],"notes,":[129],"obtained":[131],"good":[133],"enough":[134],"allow":[136],"practice.":[141],"Further":[142],"investigation":[143],"about":[144],"types":[146],"MetaMap's":[148],"failures":[149],"could":[150],"be":[151],"useful":[152],"understand":[154],"how":[155],"improve":[157],"even":[159],"better.":[160]},"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
