{"id":"https://openalex.org/W2401620532","doi":"https://doi.org/10.3233/978-1-61499-432-9-1008","title":"An Approach to Compare Bio-Ontologies Portals","display_name":"An Approach to Compare Bio-Ontologies Portals","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2401620532","doi":"https://doi.org/10.3233/978-1-61499-432-9-1008","mag":"2401620532","pmid":"https://pubmed.ncbi.nlm.nih.gov/25160340"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-432-9-1008","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-432-9-1008","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-01052549","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024343637","display_name":"Julien Grosjean","orcid":"https://orcid.org/0000-0002-7446-644X"},"institutions":[{"id":"https://openalex.org/I4210108118","display_name":"Laboratoire d'Informatique, du Traitement de l'Information et des Syst\u00e8mes","ror":"https://ror.org/01f1vfy95","country_code":"FR","type":"facility","lineage":["https://openalex.org/I141576021","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210108118","https://openalex.org/I62396329","https://openalex.org/I88814501"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Grosjean Julien","raw_affiliation_strings":["CISMeF & TIBS, LITIS EA4108, Rouen University Hospital, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISMeF & TIBS, LITIS EA4108, Rouen University Hospital, France","institution_ids":["https://openalex.org/I62396329","https://openalex.org/I4210108118"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047697321","display_name":"Lina F. Soualmia","orcid":"https://orcid.org/0000-0001-7668-2819"},"institutions":[{"id":"https://openalex.org/I4210108118","display_name":"Laboratoire d'Informatique, du Traitement de l'Information et des Syst\u00e8mes","ror":"https://ror.org/01f1vfy95","country_code":"FR","type":"facility","lineage":["https://openalex.org/I141576021","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210108118","https://openalex.org/I62396329","https://openalex.org/I88814501"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Soualmia Lina F.","raw_affiliation_strings":["CISMeF & TIBS, LITIS EA4108, Rouen University Hospital, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISMeF & TIBS, LITIS EA4108, Rouen University Hospital, France","institution_ids":["https://openalex.org/I62396329","https://openalex.org/I4210108118"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046793662","display_name":"Khedidja Bouarech","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Bouarech Khedidja","raw_affiliation_strings":["LIRMM, Universit\u00e9 Montpellier 2 & CNRS, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIRMM, Universit\u00e9 Montpellier 2 & CNRS, Montpellier, France","institution_ids":["https://openalex.org/I4210101743","https://openalex.org/I19894307","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jonquet Cl&eacute;ment","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210101743","display_name":"Laboratoire d'Informatique, de Robotique et de Micro\u00e9lectronique de Montpellier","ror":"https://ror.org/013yean28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I151295451","https://openalex.org/I19894307","https://openalex.org/I4210101743","https://openalex.org/I4210159245","https://openalex.org/I4405261681"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jonquet Cl&eacute;ment","raw_affiliation_strings":["LIRMM, Universit\u00e9 Montpellier 2 & CNRS, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIRMM, Universit\u00e9 Montpellier 2 & CNRS, Montpellier, France","institution_ids":["https://openalex.org/I4210101743","https://openalex.org/I19894307","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":null,"display_name":"Darmoni St&eacute;fan J.","orcid":null},"institutions":[{"id":"https://openalex.org/I4210108118","display_name":"Laboratoire d'Informatique, du Traitement de l'Information et des Syst\u00e8mes","ror":"https://ror.org/01f1vfy95","country_code":"FR","type":"facility","lineage":["https://openalex.org/I141576021","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210108118","https://openalex.org/I62396329","https://openalex.org/I88814501"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Darmoni St&eacute;fan J.","raw_affiliation_strings":["CISMeF & TIBS, LITIS EA4108, Rouen University Hospital, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CISMeF & TIBS, LITIS EA4108, Rouen University Hospital, France","institution_ids":["https://openalex.org/I62396329","https://openalex.org/I4210108118"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5024343637"],"corresponding_institution_ids":["https://openalex.org/I4210108118","https://openalex.org/I62396329"],"apc_list":null,"apc_paid":null,"fwci":0.9983,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.78649775,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"205","issue":null,"first_page":"1008","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8959000110626221,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8959000110626221,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.013299999758601189,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12881","display_name":"linguistics and terminology studies","score":0.011900000274181366,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6625267863273621},{"id":"https://openalex.org/keywords/patient-portal","display_name":"Patient portal","score":0.43376290798187256},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.42279601097106934},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3594328761100769},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3271055221557617},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.059046655893325806},{"id":"https://openalex.org/keywords/political-science","display_name":"Political science","score":0.05562523007392883}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6625267863273621},{"id":"https://openalex.org/C2776153502","wikidata":"https://www.wikidata.org/wiki/Q7144994","display_name":"Patient portal","level":3,"score":0.43376290798187256},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.42279601097106934},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3594328761100769},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3271055221557617},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.059046655893325806},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.05562523007392883},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.3233/978-1-61499-432-9-1008","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-432-9-1008","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:25160340","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25160340","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:HAL:lirmm-01052549v1","is_oa":true,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-01052549","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://www.efmi.org/calendar-week/icalrepeat.detail/2014/08/31/28/-/mie-2014-istanbul","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:HAL:lirmm-01052549v1","is_oa":true,"landing_page_url":"https://hal-lirmm.ccsd.cnrs.fr/lirmm-01052549","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://www.efmi.org/calendar-week/icalrepeat.detail/2014/08/31/28/-/mie-2014-istanbul","raw_type":"Conference papers"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6399999856948853}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W87108502","https://openalex.org/W2049625541","https://openalex.org/W2077044157","https://openalex.org/W2091729411","https://openalex.org/W2122174694","https://openalex.org/W2123152121","https://openalex.org/W2127480960","https://openalex.org/W2131660156","https://openalex.org/W2159583324"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W3132386800","https://openalex.org/W2896459163","https://openalex.org/W2728101909","https://openalex.org/W3043099774","https://openalex.org/W4200259495","https://openalex.org/W2860515844","https://openalex.org/W2743187438"],"abstract_inverted_index":{"BACKGROUND:":[0],"main":[1,178],"biomedical":[2],"information":[3],"retrieval":[4],"systems":[5],"are":[6,94,127,139],"based":[7,119],"on":[8,14,120,146,191],"controlled":[9],"vocabularies":[10],"and":[11,38,61,110,114,131,138,169,187],"most":[12],"specifically":[13],"terminologies":[15],"or":[16],"ontologies":[17],"(T/O).":[18],"These":[19],"classification":[20],"structures":[21],"allow":[22],"indexing,":[23],"coding,":[24],"annotating":[25],"different":[26,36,189],"kind":[27],"of":[28,50,98,106,151,175],"documents.":[29],"Many":[30],"T/O":[31,133,192],"have":[32,75,116],"been":[33,76,117],"created":[34],"for":[35,43,57],"purposes":[37],"it":[39],"became":[40],"a":[41,96,165],"problem":[42],"finding":[44],"specific":[45],"concepts":[46],"in":[47,87,104,173],"the":[48,62,83,121,136,158,184],"multitude":[49],"existing":[51],"nomenclatures.":[52],"The":[53,177],"NCBO":[54],"(National":[55],"Center":[56],"Biomedical":[58],"Ontologies)":[59],"BioPortal":[60,113,168],"CISMeF":[63],"(Catalogue":[64],"et":[65],"Index":[66],"des":[67],"Sites":[68],"M\u00e9dicaux":[69],"de":[70],"langue":[71],"Fran\u00e7aise)":[72],"HeTOP":[73,115,170],"projects":[74],"developed":[77],"to":[78,100,129,135,157],"tackle":[79],"this":[80],"issue.":[81],"OBJECTIVE:":[82],"present":[84],"work":[85],"consists":[86],"comparing":[88],"both":[89,125],"portals.":[90],"METHODS:":[91],"we":[92,161],"hereby":[93],"proposing":[95],"set":[97],"criteria":[99],"compare":[101],"bio-ontologies":[102],"portals":[103,126],"terms":[105,174],"goals,":[107],"features,":[108,143],"technologies":[109],"usability.":[111],"RESULTS:":[112],"compared":[118],"given":[122],"criteria.":[123],"While":[124],"designed":[128],"store":[130],"make":[132],"available":[134],"community":[137],"sharing":[140],"many":[141],"basic":[142,153],"they":[144],"differ":[145],"several":[147],"points":[148],"mainly":[149],"because":[150],"their":[152],"purposes.":[154],"CONCLUSION:":[155],"thanks":[156],"comparison":[159],"criteria,":[160],"can":[162],"assume":[163],"that":[164],"merge":[166],"between":[167],"is":[171],"possible":[172],"functionalities.":[176],"difficulties":[179],"will":[180],"be":[181],"about":[182],"merging":[183],"data":[185],"repositories":[186],"applying":[188],"policies":[190],"content.":[193]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
