{"id":"https://openalex.org/W2402951594","doi":"https://doi.org/10.3233/978-1-61499-423-7-16","title":"Mapping Biomedical Vocabularies: A Semi-Automated Term Matching Approach","display_name":"Mapping Biomedical Vocabularies: A Semi-Automated Term Matching Approach","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2402951594","doi":"https://doi.org/10.3233/978-1-61499-423-7-16","mag":"2402951594","pmid":"https://pubmed.ncbi.nlm.nih.gov/25000004"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-423-7-16","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-423-7-16","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083611868","display_name":"Bahadorreza Ofoghi","orcid":"https://orcid.org/0000-0003-0579-8018"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Ofoghi Bahadorreza","raw_affiliation_strings":["Health & Biomedical Informatics Centre, The University of Melbourne, Australia"],"affiliations":[{"raw_affiliation_string":"Health & Biomedical Informatics Centre, The University of Melbourne, Australia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001595112","display_name":"Guillermo L\u00f3pez\u2013Campos","orcid":"https://orcid.org/0000-0003-3011-0940"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lopez-Campos Guillermo H.","raw_affiliation_strings":["Health & Biomedical Informatics Centre, The University of Melbourne, Australia"],"affiliations":[{"raw_affiliation_string":"Health & Biomedical Informatics Centre, The University of Melbourne, Australia","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061137773","display_name":"Fernando Mart\u00edn-S\u00e1nchez","orcid":"https://orcid.org/0000-0002-7312-5707"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Martin Sanchez Fernando Jose","raw_affiliation_strings":["Health & Biomedical Informatics Centre, The University of Melbourne, Australia"],"affiliations":[{"raw_affiliation_string":"Health & Biomedical Informatics Centre, The University of Melbourne, Australia","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067214173","display_name":"Karin Verspoor","orcid":"https://orcid.org/0000-0002-8661-1544"},"institutions":[{"id":"https://openalex.org/I165779595","display_name":"University of Melbourne","ror":"https://ror.org/01ej9dk98","country_code":"AU","type":"education","lineage":["https://openalex.org/I165779595"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Verspoor Karin","raw_affiliation_strings":["Dept. of Computing and Information Systems, The University of Melbourne, Australia"],"affiliations":[{"raw_affiliation_string":"Dept. of Computing and Information Systems, The University of Melbourne, Australia","institution_ids":["https://openalex.org/I165779595"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5083611868"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4976,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.69392623,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"202","issue":null,"first_page":"16","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8051348924636841},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.6835618019104004},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.6670534014701843},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.5879054069519043},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.5458817481994629},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.5410678386688232},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5199533700942993},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5023593902587891},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.46670103073120117},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42277759313583374},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.41198575496673584},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09078806638717651},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.0891200602054596},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06594645977020264},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.06462851166725159}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8051348924636841},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.6835618019104004},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.6670534014701843},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.5879054069519043},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.5458817481994629},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.5410678386688232},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5199533700942993},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5023593902587891},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46670103073120117},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42277759313583374},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.41198575496673584},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09078806638717651},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0891200602054596},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06594645977020264},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.06462851166725159},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008498","descriptor_name":"Medical Record Linkage","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008498","descriptor_name":"Medical Record Linkage","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008498","descriptor_name":"Medical Record Linkage","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.3233/978-1-61499-423-7-16","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-423-7-16","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:25000004","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25000004","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:dro.deakin.edu.au:DU:30105946","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402457","display_name":"Deakin Research Online (Deakin University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149704539","host_organization_name":"Deakin University","host_organization_lineage":["https://openalex.org/I149704539"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/44113","is_oa":false,"landing_page_url":"http://hdl.handle.net/11343/44113","pdf_url":null,"source":{"id":"https://openalex.org/S4377196259","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W2006933206","https://openalex.org/W2018737226","https://openalex.org/W2100017293","https://openalex.org/W2104990432","https://openalex.org/W2110301462","https://openalex.org/W2122087674","https://openalex.org/W2159583324"],"related_works":["https://openalex.org/W4241523039","https://openalex.org/W2360028903","https://openalex.org/W4280543773","https://openalex.org/W178231042","https://openalex.org/W2366083136","https://openalex.org/W2387622493","https://openalex.org/W1932132538","https://openalex.org/W1989811317","https://openalex.org/W3202867831","https://openalex.org/W1597990569"],"abstract_inverted_index":{"Biomedical":[0],"vocabularies":[1,13,44,55,63],"vary":[2],"in":[3,15,53],"scope,":[4],"and":[5,34,48,79],"it":[6],"is":[7,67],"often":[8],"necessary":[9],"to":[10,17,25,57],"utilize":[11],"multiple":[12,54],"simultaneously":[14],"order":[16],"cover":[18],"the":[19,32,58,62,102],"full":[20],"range":[21],"of":[22,36,104],"concepts":[23],"relevant":[24],"a":[26,68],"given":[27],"biomedical":[28],"application.":[29],"However,":[30],"as":[31],"number":[33],"size":[35],"these":[37,99],"resources":[38],"grow":[39],"both":[40],"redundancy":[41],"(i.e.,":[42,50],"different":[43,51],"containing":[45],"similar":[46],"terms)":[47],"inconsistency":[49],"terms":[52],"referring":[56],"same":[59],"entity)":[60],"between":[61,87],"increase.":[64],"Therefore,":[65],"there":[66],"need":[69],"for":[70,83,101],"automatically":[71],"aligning":[72],"vocabularies.":[73,89],"In":[74],"this":[75],"paper,":[76],"we":[77],"explore":[78],"propose":[80],"new":[81],"methods":[82,91],"detecting":[84],"probable":[85],"matches":[86],"two":[88],"The":[90],"build":[92],"upon":[93],"existing":[94],"string":[95],"similarity":[96],"functions,":[97],"enhancing":[98],"functions":[100],"context":[103],"semi-automated":[105],"vocabulary":[106],"matching.":[107]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
