{"id":"https://openalex.org/W2129851000","doi":"https://doi.org/10.3233/978-1-61499-330-8-55","title":"Comparison of Clustering Approaches for Gene Expression Data","display_name":"Comparison of Clustering Approaches for Gene Expression Data","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2129851000","doi":"https://doi.org/10.3233/978-1-61499-330-8-55","mag":"2129851000"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-330-8-55","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-330-8-55","pdf_url":null,"source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046863989","display_name":"Anton Borg","orcid":"https://orcid.org/0000-0002-8929-7220"},"institutions":[{"id":"https://openalex.org/I52719799","display_name":"Blekinge Institute of Technology","ror":"https://ror.org/0093a8w51","country_code":"SE","type":"education","lineage":["https://openalex.org/I52719799"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Borg Anton","raw_affiliation_strings":["Blekinge Institute of Technology, #TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blekinge Institute of Technology, #TAB#","institution_ids":["https://openalex.org/I52719799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012907299","display_name":"Niklas Lavesson","orcid":"https://orcid.org/0000-0002-0535-1761"},"institutions":[{"id":"https://openalex.org/I52719799","display_name":"Blekinge Institute of Technology","ror":"https://ror.org/0093a8w51","country_code":"SE","type":"education","lineage":["https://openalex.org/I52719799"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Lavesson Niklas","raw_affiliation_strings":["Blekinge Institute of Technology, Karlskrona, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Blekinge Institute of Technology, Karlskrona, Sweden","institution_ids":["https://openalex.org/I52719799"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011890993","display_name":"Veselka Boeva","orcid":"https://orcid.org/0000-0003-3128-191X"},"institutions":[{"id":"https://openalex.org/I31151848","display_name":"Technical University of Sofia","ror":"https://ror.org/052prhs50","country_code":"BG","type":"education","lineage":["https://openalex.org/I31151848"]}],"countries":["BG"],"is_corresponding":false,"raw_author_name":"Boeva Veselka","raw_affiliation_strings":["Technical University of Sofia, Sofia, Bulgaria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Technical University of Sofia, Sofia, Bulgaria","institution_ids":["https://openalex.org/I31151848"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.0587,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.78371634,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"257","issue":null,"first_page":"55","last_page":"64"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7040417194366455},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4538106918334961},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45093828439712524},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37102869153022766},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3409852385520935},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20482423901557922}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7040417194366455},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4538106918334961},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45093828439712524},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37102869153022766},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3409852385520935},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20482423901557922},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-61499-330-8-55","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-330-8-55","pdf_url":null,"source":{"id":"https://openalex.org/S4210201731","display_name":"Frontiers in artificial intelligence and applications","issn_l":"0922-6389","issn":["0922-6389","1879-8314"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Artificial Intelligence and Applications","raw_type":"book-chapter"},{"id":"mag:2129851000","is_oa":false,"landing_page_url":"http://www.diva-portal.org/smash/record.jsf?pid=diva2:833855","pdf_url":null,"source":{"id":"https://openalex.org/S4306420819","display_name":"Scandinavian Conference on AI","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"Scandinavian Conference on AI","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W66095516","https://openalex.org/W1556472699","https://openalex.org/W1565746575","https://openalex.org/W1565924926","https://openalex.org/W1751719206","https://openalex.org/W1986407160","https://openalex.org/W1987144436","https://openalex.org/W1987971958","https://openalex.org/W2009543464","https://openalex.org/W2012826750","https://openalex.org/W2030724586","https://openalex.org/W2033403400","https://openalex.org/W2103108181","https://openalex.org/W2121947440","https://openalex.org/W2123402141","https://openalex.org/W2127218421","https://openalex.org/W2127284416","https://openalex.org/W2133098435","https://openalex.org/W2133990480","https://openalex.org/W2135364554","https://openalex.org/W2141012957","https://openalex.org/W2142531048","https://openalex.org/W2153233077","https://openalex.org/W2247248612"],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189"],"abstract_inverted_index":{"Clustering":[0],"algorithms":[1,49,58,70],"have":[2],"been":[3],"used":[4,97],"to":[5,11,84,98,146],"divide":[6],"genes":[7,26,36],"into":[8],"groups":[9],"according":[10],"the":[12,24,35,67,100,109,117,128,139,151,156],"degree":[13],"of":[14,66,111,119],"their":[15],"expression":[16,76,89],"similarity.":[17],"Such":[18],"a":[19,40,120],"grouping":[20],"may":[21],"suggest":[22],"that":[23,34],"respective":[25],"are":[27,50,59,96,133],"correlated":[28],"and/or":[29],"co-regulated,":[30],"and":[31,55,104,123,138,158],"subsequently":[32],"indicates":[33],"could":[37],"possibly":[38],"share":[39],"common":[41],"biological":[42],"role.":[43],"In":[44],"this":[45],"paper,":[46],"four":[47,68],"clustering":[48,69,101,153],"investigated:":[51],"k-means,":[52],"cut-clustering,":[53],"spectral":[54,152],"expectation-maximization.":[56],"The":[57,64,130],"benchmarked":[60],"against":[61],"each":[62],"other.":[63],"performance":[65],"is":[71,144],"studied":[72],"on":[73],"time":[74],"series":[75],"data":[77],"using":[78],"Dynamic":[79],"TimeWarping":[80],"distance":[81],"in":[82],"order":[83],"measure":[85],"similarity":[86],"between":[87],"gene":[88],"profiles.":[90],"Four":[91],"different":[92],"cluster":[93,121],"validation":[94,160],"measures":[95],"evaluate":[99],"algorithms:":[102],"Connectivity":[103],"Silhouette":[105,157],"Index":[106,114,125],"for":[107,115,126],"estimating":[108],"quality":[110],"clusters,":[112],"Jaccard":[113],"evaluating":[116],"stability":[118],"method":[122],"Rand":[124,159],"assessing":[127],"accuracy.":[129],"obtained":[131],"results":[132],"analyzed":[134],"by":[135],"Friedman's":[136],"test":[137],"Nemenyi":[140],"post-hoc":[141],"test.":[142],"K-means":[143],"demonstrated":[145],"be":[147],"significantly":[148],"better":[149],"than":[150],"algorithm":[154],"under":[155],"indices.":[161]},"counts_by_year":[{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2016-06-24T00:00:00"}
