{"id":"https://openalex.org/W72844244","doi":"https://doi.org/10.3233/978-1-61499-289-9-496","title":"Building a Knowledge Base of Severe Adverse Drug Events Based on AERS Reporting Data Using Semantic Web Technologies","display_name":"Building a Knowledge Base of Severe Adverse Drug Events Based on AERS Reporting Data Using Semantic Web Technologies","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W72844244","doi":"https://doi.org/10.3233/978-1-61499-289-9-496","mag":"72844244","pmid":"https://pubmed.ncbi.nlm.nih.gov/23920604"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-289-9-496","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-289-9-496","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007963072","display_name":"Guoqian Jiang","orcid":"https://orcid.org/0000-0003-2940-0019"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Jiang Guoqian","raw_affiliation_strings":["Department of Health Sciences Research, Division of Biomedical Statistics & Informatics, Mayo Clinic College of Medicine, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Division of Biomedical Statistics & Informatics, Mayo Clinic College of Medicine, Rochester, MN, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100406711","display_name":"Liwei Wang","orcid":"https://orcid.org/0000-0001-9970-8604"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I2802423016","display_name":"WinnMed","ror":"https://ror.org/02s47w807","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I2802423016"]},{"id":"https://openalex.org/I4210136497","display_name":"Jilin Medical University","ror":"https://ror.org/03mzw7781","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136497"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Wang Liwei","raw_affiliation_strings":["Jilin University","Mayo Clinic College of Medicine and Science"],"affiliations":[{"raw_affiliation_string":"Jilin University","institution_ids":["https://openalex.org/I4210136497","https://openalex.org/I194450716"]},{"raw_affiliation_string":"Mayo Clinic College of Medicine and Science","institution_ids":["https://openalex.org/I2802423016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101585391","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2570-3741"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liu Hongfang","raw_affiliation_strings":["Mayo Clinic College of Medicine and Science;"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic College of Medicine and Science;","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053205429","display_name":"Harold R. Solbrig","orcid":"https://orcid.org/0000-0002-5928-3071"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Solbrig Harold R.","raw_affiliation_strings":["Mayo Clinic College of Medicine and Science;"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic College of Medicine and Science;","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060390916","display_name":"Christopher G. Chute","orcid":"https://orcid.org/0000-0001-5437-2545"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chute Christopher G.","raw_affiliation_strings":["Mayo Clinic College of Medicine and Science;"],"affiliations":[{"raw_affiliation_string":"Mayo Clinic College of Medicine and Science;","institution_ids":["https://openalex.org/I1330342723"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5007963072"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.0143,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.74681699,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"192","issue":null,"first_page":"496","last_page":"500"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9735000133514404,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.9484000205993652,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.6059637069702148},{"id":"https://openalex.org/keywords/common-terminology-criteria-for-adverse-events","display_name":"Common Terminology Criteria for Adverse Events","score":0.5816709399223328},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5736632347106934},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5494231581687927},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.535223662853241},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.5262289047241211},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.44754093885421753},{"id":"https://openalex.org/keywords/adverse-effect","display_name":"Adverse effect","score":0.44055551290512085},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4141806662082672},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3877270221710205},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3244560956954956},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2306329607963562},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.17644670605659485},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.10360714793205261}],"concepts":[{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.6059637069702148},{"id":"https://openalex.org/C2777793932","wikidata":"https://www.wikidata.org/wiki/Q1116229","display_name":"Common Terminology Criteria for Adverse Events","level":3,"score":0.5816709399223328},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5736632347106934},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5494231581687927},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.535223662853241},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.5262289047241211},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.44754093885421753},{"id":"https://openalex.org/C197934379","wikidata":"https://www.wikidata.org/wiki/Q2047938","display_name":"Adverse effect","level":2,"score":0.44055551290512085},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4141806662082672},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3877270221710205},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3244560956954956},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2306329607963562},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.17644670605659485},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.10360714793205261},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016907","descriptor_name":"Adverse Drug Reaction Reporting Systems","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D064420","descriptor_name":"Drug-Related Side Effects and Adverse Reactions","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.3233/978-1-61499-289-9-496","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-289-9-496","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:23920604","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23920604","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2350593162","https://openalex.org/W2390350206","https://openalex.org/W1969477129","https://openalex.org/W2921208823","https://openalex.org/W2353483812","https://openalex.org/W2131808775","https://openalex.org/W2130038259","https://openalex.org/W2360756181","https://openalex.org/W2374093222","https://openalex.org/W2359533638"],"abstract_inverted_index":{"A":[0],"semantically":[1],"coded":[2],"knowledge":[3,55],"base":[4,56],"of":[5,35,39,57,91,146,149],"adverse":[6],"drug":[7],"events":[8],"(ADEs)":[9],"with":[10],"severity":[11,33],"information":[12,34],"is":[13,42],"critical":[14],"for":[15,52,116],"clinical":[16],"decision":[17],"support":[18],"systems":[19],"and":[20,30,45,78,83,107,122,137,162],"translational":[21],"research":[22],"applications.":[23],"However":[24],"it":[25],"remains":[26],"challenging":[27],"to":[28,43],"measure":[29],"identify":[31],"the":[32,40,62,89,96,108,112,124,127,130,144],"ADEs.":[36],"The":[37],"objective":[38],"study":[41],"develop":[44],"evaluate":[46],"a":[47,54,73],"semantic":[48],"web":[49],"based":[50,60],"approach":[51],"building":[53],"severe":[58],"ADEs":[59,125],"on":[61],"FDA":[63],"Adverse":[64,117],"Event":[65,118],"Reporting":[66],"System":[67],"(AERS)":[68],"reporting":[69,76],"data.":[70],"We":[71,94,110,135],"utilized":[72],"normalized":[74],"AERS":[75],"dataset":[77],"extracted":[79],"putative":[80],"drug-ADE":[81,97],"pairs":[82,142,152,158,164],"their":[84],"associated":[85],"outcome":[86],"codes":[87],"in":[88,129,143,154,159,165],"domain":[90,145],"cardiac":[92,147],"disorders.":[93],"validated":[95,138],"associations":[98],"using":[99],"ADE":[100],"datasets":[101],"from":[102],"SIDe":[103],"Effect":[104],"Resource":[105],"(SIDER)":[106],"UMLS.":[109],"leveraged":[111],"Common":[113],"Terminology":[114],"Criteria":[115],"(CTCAE)":[119],"grading":[120],"system":[121],"classified":[123],"into":[126],"CTCAE":[128],"Web":[131],"Ontology":[132],"Language":[133],"(OWL).":[134],"identified":[136],"2,444":[139],"unique":[140],"Drug-ADE":[141],"disorders,":[148],"which":[150],"760":[151],"are":[153],"Grade":[155,160,166],"5,":[156],"775":[157],"4":[161],"2,196":[163],"3.":[167]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
