{"id":"https://openalex.org/W1553973411","doi":"https://doi.org/10.3233/978-1-61499-289-9-1068","title":"Use of Controlled Vocabularies to Improve Biomedical Information Retrieval Tasks","display_name":"Use of Controlled Vocabularies to Improve Biomedical Information Retrieval Tasks","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W1553973411","doi":"https://doi.org/10.3233/978-1-61499-289-9-1068","mag":"1553973411","pmid":"https://pubmed.ncbi.nlm.nih.gov/23920842"},"language":"en","primary_location":{"id":"doi:10.3233/978-1-61499-289-9-1068","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-289-9-1068","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://archive-ouverte.unige.ch/unige:32836","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017034341","display_name":"Emilie Pasche","orcid":"https://orcid.org/0000-0002-9118-5762"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Pasche Emilie","raw_affiliation_strings":["Division of Medical Information Sciences, University Hospitals of Geneva and University of Geneva, Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Division of Medical Information Sciences, University Hospitals of Geneva and University of Geneva, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091440467","display_name":"Julien Gobeill","orcid":"https://orcid.org/0000-0001-9809-7741"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gobeill Julien","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022872913","display_name":"Dina Vishnyakova","orcid":"https://orcid.org/0000-0001-9101-5993"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vishnyakova Dina","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ruch Patrick","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5016557721","display_name":"Christian Lovis","orcid":"https://orcid.org/0000-0002-2681-8076"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lovis Christian","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5017034341"],"corresponding_institution_ids":["https://openalex.org/I114457229"],"apc_list":null,"apc_paid":null,"fwci":0.5801,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.70086455,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"192","issue":null,"first_page":"1068","last_page":"1068"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9355000257492065,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9085999727249146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/query-expansion","display_name":"Query expansion","score":0.8622397780418396},{"id":"https://openalex.org/keywords/search-engine","display_name":"Search engine","score":0.7637604475021362},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7546412348747253},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7126160860061646},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.6783810257911682},{"id":"https://openalex.org/keywords/web-search-query","display_name":"Web search query","score":0.6072021722793579},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.5931538939476013},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.528654158115387},{"id":"https://openalex.org/keywords/search-oriented-architecture","display_name":"Search-oriented architecture","score":0.4608888328075409},{"id":"https://openalex.org/keywords/query-language","display_name":"Query language","score":0.4474560618400574},{"id":"https://openalex.org/keywords/web-query-classification","display_name":"Web query classification","score":0.32014238834381104}],"concepts":[{"id":"https://openalex.org/C99016210","wikidata":"https://www.wikidata.org/wiki/Q5488129","display_name":"Query expansion","level":2,"score":0.8622397780418396},{"id":"https://openalex.org/C97854310","wikidata":"https://www.wikidata.org/wiki/Q19541","display_name":"Search engine","level":2,"score":0.7637604475021362},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7546412348747253},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7126160860061646},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.6783810257911682},{"id":"https://openalex.org/C164120249","wikidata":"https://www.wikidata.org/wiki/Q995982","display_name":"Web search query","level":3,"score":0.6072021722793579},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.5931538939476013},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.528654158115387},{"id":"https://openalex.org/C157154645","wikidata":"https://www.wikidata.org/wiki/Q7441612","display_name":"Search-oriented architecture","level":5,"score":0.4608888328075409},{"id":"https://openalex.org/C192028432","wikidata":"https://www.wikidata.org/wiki/Q845739","display_name":"Query language","level":2,"score":0.4474560618400574},{"id":"https://openalex.org/C118689300","wikidata":"https://www.wikidata.org/wiki/Q7978614","display_name":"Web query classification","level":4,"score":0.32014238834381104},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046650","descriptor_name":"Medical Subject Headings","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.3233/978-1-61499-289-9-1068","is_oa":false,"landing_page_url":"https://doi.org/10.3233/978-1-61499-289-9-1068","pdf_url":null,"source":{"id":"https://openalex.org/S4210179765","display_name":"Studies in health technology and informatics","issn_l":"0926-9630","issn":["0926-9630","1879-8365"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310318577","host_organization_name":"IOS Press","host_organization_lineage":["https://openalex.org/P4310318577"],"host_organization_lineage_names":["IOS Press"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in Health Technology and Informatics","raw_type":"book-chapter"},{"id":"pmid:23920842","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23920842","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Studies in health technology and informatics","raw_type":null},{"id":"pmh:oai:unige.ch:unige:32836","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:32836","pdf_url":"https://archive-ouverte.unige.ch/unige:32836","source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 0926-9630","raw_type":"Text"},{"id":"pmh:oai:doc.rero.ch:20140113093917-GY","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:hesso.tind.io:413","is_oa":false,"landing_page_url":"http://arodes.hes-so.ch/record/413","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/413","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:unige.ch:unige:32836","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:32836","pdf_url":"https://archive-ouverte.unige.ch/unige:32836","source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 0926-9630","raw_type":"Text"},"sustainable_development_goals":[{"score":0.5,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1553973411.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2572349046","https://openalex.org/W2096359267","https://openalex.org/W4256058599","https://openalex.org/W2017989738","https://openalex.org/W1981131819","https://openalex.org/W3197639690","https://openalex.org/W2026738364","https://openalex.org/W2146885082","https://openalex.org/W2181886559","https://openalex.org/W2970853428"],"abstract_inverted_index":{"The":[0,99],"high":[1],"heterogeneity":[2],"of":[3,32,43,53,83,86,94,101,124,127,141,150],"biomedical":[4,15,19,128],"vocabulary":[5],"is":[6,22],"a":[7,131,139],"major":[8],"obstacle":[9],"for":[10,24],"information":[11],"retrieval":[12],"in":[13,81],"large":[14],"collections.":[16],"Therefore,":[17],"using":[18],"controlled":[20,37],"vocabularies":[21,38,63],"crucial":[23],"managing":[25],"these":[26],"contents.":[27],"We":[28,71,118],"investigate":[29],"the":[30,41,51,84,92,97,108,114,148],"impact":[31],"query":[33,74,122,142],"expansion":[34,75,100,123,143],"based":[35,76],"on":[36,50,77,107],"to":[39,65,134],"improve":[40,135],"effectiveness":[42],"two":[44],"search":[45,89,110,136,151],"engines.":[46,152],"Our":[47],"strategy":[48],"relies":[49],"enrichment":[52],"users'":[54],"queries":[55],"with":[56],"additional":[57],"terms,":[58],"directly":[59],"derived":[60],"from":[61],"such":[62],"applied":[64],"infectious":[66],"diseases":[67,95],"and":[68],"chemical":[69,102],"patents.":[70],"observed":[72],"that":[73,121],"pathogen":[78],"names":[79],"resulted":[80],"improvements":[82],"top-precision":[85],"our":[87],"first":[88],"engine,":[90,111],"while":[91],"normalization":[93],"degraded":[96],"top-precision.":[98],"entities,":[103],"which":[104],"was":[105],"performed":[106],"second":[109],"positively":[112],"affected":[113],"mean":[115],"average":[116],"precision.":[117],"have":[119],"shown":[120],"some":[125],"types":[126],"entities":[129],"has":[130],"great":[132],"potential":[133],"effectiveness;":[137],"therefore":[138],"fine-tuning":[140],"strategies":[144],"could":[145],"help":[146],"improving":[147],"performances":[149]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-17T17:19:04.345684","created_date":"2025-10-10T00:00:00"}
